BAC Information

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BAC

Clone NameMSMg01-139B20
Chromosome13 (Build37)
Map Location 16,183,640 - 16,184,233
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670994, EG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139B20.T7 (MSMg01no139_b20.b1)MSMg01-139B20.TJ (MSMg01no139_b20.g1)
ACCAG344601AG344602
length711708
length of high quality
(start - end)
589 (65 - 653)638 (71 - 708)
definitionCHROMAT_FILE: MSMg01no139_b20.b1 PHD_FILE: MSMg01no139_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:24 2005CHROMAT_FILE: MSMg01no139_b20.g1 PHD_FILE: MSMg01no139_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAATTTGCGGCGCTAAACGACTCCTATATTCCAAGATCCGCGGAATT
CAGAAGAATCCCCTGGAGATAAGGAAAAGGGGCAGAGCATGAGGCTGATT
GTAGCTTGGTAAGTTTTGTCCTTGGAGATTTTCTTGCAATGTTATGATGG
TAGTTCCATGTTTCTCCACACCCACAAAAGAAACATCATCAGGAGTGAGG
TCAGTGCTGACTTGGAGTGTCAATGTGGGTTCATCAGCTCTGTGGGCTGT
GCATGACAGTGTGCCAATACTGGAGATGAAGCACTATAGTTGAGGTGGGG
TAAGAAATATACAGAAGCTTCCTCAATGATGCTGCTATGAGCCTAAAAGA
GGTCCTCAGAACTAAACTGTATTCAAATTTAGGGAAAAAATGGTTCATTT
CAATAATTTTAGTGTAGTAGTTTAATACAAAGCTCATTAGTTTAAATACT
GTCCAAATGCAAAACAGGTCAATGGAAAAAAATCATATTGTTTCAATAAA
AGTAGGAAAAAGATGTTGAAGTTGAATGTGTATTTATAATATTTTCAAAG
TACTAGAAAGTGTTTTCTTAGGTTCATTCAATTTCTTAACATTCTATGAT
AAACATCTATTTTAATTAATACACGTGGTAGGGTAGATACATATACATGA
GTACATGTGGTATGTGTGTGAAAATGTGTGAGTGAACATATTCCCCCCTT
ACTTTATCTTA
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCACACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCTTTTCCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAATTC
CGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTAT
TGAGGATTTTTGCATCAATATTCATAAGAGAAATTGGTCTGAAGTTCTTT
ATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTC
ATAAAATGAGTTGGGTAGAGTACCTTTTGTGAAATAGTTGGTGCAGAACT
GGAATTAGATCTTCTCTGAAGGTCTGATAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTT
CTTTAGGGGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAAC
TTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCATCCAGGTTTTC
CAGTTTTGTTGAGCATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGA
TTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_b20.b1 MSMg01no139_b20.b1 CHROMAT_FILE:
MSMg01no139_b20.b1 PHD_FILE: MSMg01no139_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:24 2005
         (589 letters)



>mm_chr13_16183440_16184433
          Length = 994

 Score = 1110 bits (574), Expect = 0.0
 Identities = 587/594 (98%), Gaps = 5/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagataaggaaaaggggcagagcatgaggctgattgtagcttggtaagttttgtccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagataaggaaaaggggcagagcatgaggctgattgtagcttggtaagttttgtccttg 260

                                                                       
Query: 61  gagattttcttgcaatgttatgatggtagttccatgtttctccacacccacaaaagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gagattttcttgcaatgttatgatggtagttccatgtttctccacacccacaaaagaaat 320

                                                                       
Query: 121 atcatcaggagtgaggtcagtgctgacttggagt-----gtcaatgtgggttcatcagct 175
           ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 321 atcatcaggagtgaggtcagtgctgacttggagtactgtgtcaatgtgggttcatcagct 380

                                                                       
Query: 176 ctgtgggctgtgcatgacagtgtgccaatactggagatgaagcactatagttgaggtggg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgggctgtgcatgacagtgtgccaatactggagatgaagcactatagttgaggtggg 440

                                                                       
Query: 236 gtaagaaatatacagaagcttcctcaatgatgctgctatgagcctaaaagaggtcctcag 295
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gtaagaaatatacagaagcttcctcaatgatgctgctatgagcctaaaggaggtcctcag 500

                                                                       
Query: 296 aactaaactgtattcaaatttagggaaaaaatggttcatttcaataattttagtgtagta 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactaaactgtattcaaatttagggaaaaaatggttcatttcaataattttagtgtagta 560

                                                                       
Query: 356 gtttaatacaaagctcattagtttaaatactgtccaaatgcaaaacaggtcaatggaaaa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttaatacaaagctcattagtttaaatactgtccaaatgcaaaacaggtcaatggaaaa 620

                                                                       
Query: 416 aaatcatattgtttcaataaaagtaggaaaaagatgttgaagttgaatgtgtatttataa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcatattgtttcaataaaagtaggaaaaagatgttgaagttgaatgtgtatttataa 680

                                                                       
Query: 476 tattttcaaagtactagaaagtgttttcttaggttcattcaatttcttaacattctatga 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattttcaaagtactagaaagtgttttcttaggttcattcaatttcttaacattctatga 740

                                                                 
Query: 536 taaacatctattttaattaatacacgtggtagggtagatacatatacatgagta 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaacatctattttaattaatacacgtggtagggtagatacatatacatgagta 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 994
Length adjustment: 10
Effective length of query: 579
Effective length of database: 984
Effective search space:   569736
Effective search space used:   569736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)