BAC Information

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BAC

Clone NameMSMg01-140C23
Chromosome13 (Build37)
Map Location 23,952,848 - 23,953,423
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140C23.T7 (MSMg01no140_c23.b1)MSMg01-140C23.TJ (MSMg01no140_c23.g1)
ACCAG345394AG345395
length727730
length of high quality
(start - end)		649 (69 - 717)558 (72 - 629)
definitionCHROMAT_FILE: MSMg01no140_c23.b1 PHD_FILE: MSMg01no140_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:50 2005CHROMAT_FILE: MSMg01no140_c23.g1 PHD_FILE: MSMg01no140_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTTANATATTTCCGTATGGCAGACTACATTACTTATTAGCAGAAAGTC
CCACCACACTATCACTTAGAATAAAAGCCAAGTCGCTCCCATATACAGGA
ATTTACAATGGTTTAGGAAGTAGATCGGGTTTAGAGTGGTTTTAGAGTAT
TGCATTATTTGTGAGATGGTTAGCTAGAGCGGAACTCCCTAATTAGAACC
ATGACTTGGGTGTGAAAGCCCTTGTCCTAGGAGTGTAAAGACCTCACACC
TGGCTTCTAAGACTCTACTGATGTCCCTATTACTTTCTTTCAACCCACAC
TCCCTGCAGGCCCATCCTCCTCGGCAGAACTTATTGTTACCATGATTAAT
GCCTCACTACAAGCCATTCTTGAGGCTAATTCTACCCTTGCTAGGGATTG
TTATTCGTCCCAGCCTCCTTTTTATGAAGGAATAGCCCTTTTTGGAGAGG
TGGTTGCCACCAATGATACTTCCTTTCTGAGATGGCATCTGGAGTCTAAA
GAAGGGCTGACTCTTGGCCAAATATCTGGTATTGGTCTCTGTCTTTTGGG
ACCCCAGATGCTTCCCCCCTCACCCCTATTTGACATGTGTAATCAAACCC
TGGCTCTCCACCTTGCTTCCCAGCCTTTTGGGACCCTTCATGGGCATTCT
GTTGCTTTTGTCATTTGGCCCTTGGGC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTAAAGGCCAGAAAGAGAAAACTGCCA
CCCTTGGTTTTACCCATCCTCAGGAGAGAGAGGTGTTTGAGAGAACTCTC
CTGTGAGATTAGGGTGATATTTTGATGGCTCACCTATACATATAATGTCT
TCTCCCTGTGGTCTTCAACAACCATGGTGTGCATTGGAGAGACAGATAGA
GGTGTGGAGGGGGCATAGGCTGTCTTTGGTTTGCAACAGCTCCTGAGCTA
ATGAGTCAATTTTTCATTTACCAAGACCCAGCAGCATAAGACAATATATT
GTGTAGTGTAATATCTGCAACTTCTTTAGAGATTAATAGAAGTATTAACC
AAGATTAATAGTATGTTTATTCTGTGCAATGAAATTTTATCCATGATAAA
TTGACTGCCTCTAATGTAATACTTTGAGGAAGCTATTTAACCTCAGAGTT
ATAAGAAAAGTTGAAATAATAACTGCCAGCCAATGGGGTTGTCATAAAGA
TTTAATAAAAGGACAAGTATAGTCTGTTGACTTTTGGCAAATGTTCCTGA
TCCAAGTAGAACACACCTTTATGGGCAGTGTTAGGTAGAAGTTCCAAGCA
CAGTCTCTTGGGTTAGACTGCTCATAACTGACCCCCAACCTGTTGCTCAT
GGTTGGGCATTCATCATGTTACTAAGNCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_c23.g1 MSMg01no140_c23.g1 CHROMAT_FILE:
MSMg01no140_c23.g1 PHD_FILE: MSMg01no140_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:50 2005
         (558 letters)



>mm_chr13_23952493_23953450
          Length = 958

 Score =  959 bits (496), Expect = 0.0
 Identities = 548/576 (95%), Gaps = 18/576 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtaaaggccagaaagaga-aaactgccacccttggttttacccatcctcaggagagag 59
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 931 atgtaaaggccagaaagagagagactgccacccttggttttacccatcctcaggagagag 872

                                                                       
Query: 60  aggtgtttgagagaactctcctgtgagattagggtgatattttgatggctcacctataca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 871 aggtgtttgagagaactctcctgtgagattagggtgatattttgatggctcacctatgca 812

                                                                       
Query: 120 tataatgtcttctccctgtggtcttcaacaaccatg-----------------gtgtgca 162
           |||||||||||||  |||||||||||||||||||||                 |||||||
Sbjct: 811 tataatgtcttctttctgtggtcttcaacaaccatggtgaaaaaggagctaccgtgtgca 752

                                                                       
Query: 163 ttggagagacagatagaggtgtggagggggcataggctgtctttggtttgcaacagctcc 222
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 751 ttggagagacagatagaggtgtggagggggcatgggctgtctttggtttgcaacagctcc 692

                                                                       
Query: 223 tgagctaatgagtcaatttttcatttaccaagacccagcagcataagacaatatattgtg 282
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 691 tgagctaatgagtcaatttttcatttaccaagacccagcagcataagacaatgtattgtg 632

                                                                       
Query: 283 tagtgtaatatctgcaacttctttagagattaatagaagtattaaccaagattaatagta 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tagtgtaatatctgcaacttctttagagattaatagaagtattaaccaagattaatagta 572

                                                                       
Query: 343 tgtttattctgtgcaatgaaattttatccatgataaattgactgcctctaatgtaatact 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtttattctgtgcaatgaaattttatccatgataaattgactgcctctaatgtaatact 512

                                                                       
Query: 403 ttgaggaagctatttaacctcagagttataagaaaagttgaaataataactgccagccaa 462
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 511 ttgaggaagctatttaacctcagagttataagaaaaattgaaataataactgccagccaa 452

                                                                       
Query: 463 tggggttgtcataaagatttaataaaaggacaagtatagtctgttgacttttggcaaatg 522
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 451 tggggttgtcataaagatttaataaaaggacaagtatagtttgttgacttttggcaaatg 392

                                               
Query: 523 ttcctgatccaagtagaacacacctttatgggcagt 558
           |||||||||||||||||||||||||| ||| |||||
Sbjct: 391 ttcctgatccaagtagaacacaccttcatgagcagt 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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