BAC Information

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BAC

Clone NameMSMg01-140I09
Chromosome13 (Build37)
Map Location 68,025,274 - 68,025,653
singlet/doubletsinglet
Overlap genenone
Upstream geneMterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
Downstream geneLOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I09.T7 (MSMg01no140_i09.b1)MSMg01-140I09.TJ (MSMg01no140_i09.g1)
ACCAG345636AG345637
length716710
length of high quality
(start - end)
299 (76 - 374)510 (78 - 587)
definitionCHROMAT_FILE: MSMg01no140_i09.b1 PHD_FILE: MSMg01no140_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:17 2005CHROMAT_FILE: MSMg01no140_i09.g1 PHD_FILE: MSMg01no140_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAACACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCCAAGCTCTTCGGCTTCAAGGATTTTCTATGATGTTAGAAC
ACTGCTGGAGGCTTACCTATGTCAAAAATCAATCTTTAAAGGCACTTATA
ATAAAACAATACTGAAAGAGAGCATACACCAGACTAACTCGGGGACAGGG
TTTGAGTATATGGGCTATGAGAATGTCAAGGTTCCAGGAGGCTGAGTTTC
CTTGAAACTCTTTGCCTTGTGACTGCCTCCAGGCCTTTCGACCGGACAGG
CAGACTTCACTGGAGTGGGTGTATTATGTCCCTAGCACCAACAGTAAGTA
GTAAATACTAAGGATTGCTTTAGCCAACCAATAAGAATTTTGTGTTGTAT
TTCCTAAGGATAGTGCCAGGGAATGGTGTTGCACACTTTTAATCCCAGCA
CTTGGGATGTAGAGGCTGGCGTATTTCTGAGCTCGTGTCCTTTCTGCTCT
ACTTAGTGATTTCTAGTACATTCCATTTTTATACAGTGATACTCTGTCTA
TAACTATTTCATCAAGACCCCTTTTTTTCCAACATCGTATGATTTCACTG
CCTTCTACATTTACTTTTTTACTGCATTCTTGGTTTTTACTTTTTATCTT
TCCACGCTTCCTTTTTACCCCCTCCTTCTCCTTTCTTTTTTTTTCCTCCC
ACTACCCCCCTTTTCT
NTTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCC
ATAAAAGCCCCTAGCTTTTGAGCCTCGGGGCCGGCATCTGTTATCTCCTG
TGTGGGATTCATGCCGGTCCGGAGCTCCGTAATTAAACGTCCTCATGCAA
TTACAGCGAGTGGGTCCTCGTGTTTCTTTGGGTGCTCTCACACTTCCGAG
ACTAGAGTGGGGGTCCCCGAAAGGGGGTCTTACACTGCCATGCTTCCAGC
CTTGATGATAATGGACTGAACTCTCTGAACCTGTAAGCCAGCCCAATTAA
ATGTTCTTATAAGAGTTGCCTTGGTCGTGGTGCCTGTTCATAGCAGTAAA
ACCCTAAGACAGAGCTTTTGGAAACATTCAGAGACAGAGTCCTTGGTAAG
GTACAGATGGGTGGAGTTTATCCTCCCACTTTCCACCAGATGAGGAACTA
ACACCCAGATGAAAGCAGAATTCTGAGTCTCCATTTCTGAGTTAAGTTAG
CTCACCGACCTGTATATTTTAGCCAGTTGAGGTGTTGTTGTTGAGGCTAA
AAGAACCCCTATGTTATAGAGAAGCTAAAAAATAATCTGGTTATCTTGGA
TTCTGTTTACTCAATCTTCTCCTTCCCTAGCTATTTGATACAATTACACA
TAACGGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i09.g1 MSMg01no140_i09.g1 CHROMAT_FILE:
MSMg01no140_i09.g1 PHD_FILE: MSMg01no140_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:17 2005
         (510 letters)



>mm_chr13_68024744_68025653
          Length = 910

 Score =  706 bits (365), Expect = 0.0
 Identities = 377/381 (98%), Gaps = 1/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 130 cgagtgggtcctcgtgtttctttgggtgctctcacacttccgagactagagtgggggtcc 189
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 910 cgagtgggtcctcgtgtttctttgggtgctctcacactcccgagactagagtgggggtcc 851

                                                                       
Query: 190 ccgaaagggggtcttacactgccatgcttccagccttgatgataatggactgaactctct 249
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 850 ccgaaagggggtcttacactgccacgcttccagccttgatgataatggactgaac-ctct 792

                                                                       
Query: 250 gaacctgtaagccagcccaattaaatgttcttataagagttgccttggtcgtggtgcctg 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaacctgtaagccagcccaattaaatgttcttataagagttgccttggtcgtggtgcctg 732

                                                                       
Query: 310 ttcatagcagtaaaaccctaagacagagcttttggaaacattcagagacagagtccttgg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttcatagcagtaaaaccctaagacagagcttttggaaacattcagagacagagtccttgg 672

                                                                       
Query: 370 taaggtacagatgggtggagtttatcctcccactttccaccagatgaggaactaacaccc 429
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 taagggacagatgggtggagtttatcctcccactttccaccagatgaggaactaacaccc 612

                                                                       
Query: 430 agatgaaagcagaattctgagtctccatttctgagttaagttagctcaccgacctgtata 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agatgaaagcagaattctgagtctccatttctgagttaagttagctcaccgacctgtata 552

                                
Query: 490 ttttagccagttgaggtgttg 510
           |||||||||||||||||||||
Sbjct: 551 ttttagccagttgaggtgttg 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)