BAC Information

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BAC

Clone NameMSMg01-140J04
Chromosome13 (Build37)
Map Location 60,182,603 - 60,183,046
singlet/doubletsinglet
Overlap genenone
Upstream geneNtrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140J04.T7 (MSMg01no140_j04.b1)MSMg01-140J04.TJ (MSMg01no140_j04.g1)
ACCAG345672AG345673
length721696
length of high quality
(start - end)
242 (49 - 290)444 (75 - 518)
definitionCHROMAT_FILE: MSMg01no140_j04.b1 PHD_FILE: MSMg01no140_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:20 2005CHROMAT_FILE: MSMg01no140_j04.g1 PHD_FILE: MSMg01no140_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCC
GCGGAATTCTCTCCATAATCCTGTGTATCTCACTATCCTGCTGATCAAGG
CCATGGTCCGCTAGACTCTTTCTTTAAATGGTTCCTTCTCTTGTGTGGTT
TTTCAAAATACTGGACATGGCTGACCACTCCCTTTGGTTCTGGGTGTTTC
TTCATGTCTTAAGTCTATTTTCTTTGTCTGATTTCCATGTCTTTGTCTTT
AAAAGGTTGTTGGTTTTGGGTTTTTTGGTTTTTTGTTTTTTTATCTCCCA
CGCCACTTGTCCCCTTGTTTCTTCTTTTTCCCCCACCCCCAAACCCTTCT
TCAGTAGTTCTAATTCCAACAATCTTAATTCATTTCTGACTCTTTTTTTA
TTGTATTCGTTTTCCTTCTGCCCCCCCCTGCTTTTTCTTACCTCTTCTTT
TCTTCTCTTTCTTTTCTTTTCTTTCCCTTCTTTTTGCCCTTTTTTTTCTT
CCTATTTTTATTCATTCTCTTCTTACTCTTTTTACTAACATCCTATCATT
CCCTCTCTTTATTTCCACCTTCTTTCCTACATATTTTTTTTTTAACTATC
ATTATTTCCCCATTATTTTATTTCCCCCTAATCTTATATAATATTAAAAT
TCCAATTATTCTTTATCTCTTTCTCATTTTCCTACCCCACTCTTTTTTAT
CTTTTCTCTTTCACCACAATC
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCATTGTCATTTCTATTGTCCATC
ATCGGGTTTTCTAGTTTGTAAATATCCGTCCTTCCTCACCTCTCTGGCTA
CTGACTGGTTGTAATAAAGATCTGATGACCAACAGACAGGCAGGAAATAG
GGAACATAACTTCCGGGCAGAGAGGATGATGTGAGGGAAGAAATTGTGGG
AGAATCGGGTGCTGACACAGGGGAACAGATGGACCAGAGCAGAGCAGAGA
AAGGTGTGCAGCCAGCCACATGGTGGGTCACGGGCAAGATAGTTAGGTTA
ACTTAGATGAGGTAGATTCATGACTGTTCTATCGAAAGGCTTAAGCTCCG
TGTCATTGTTTAATAGCTGGCTGGTCTGCAAAGTCCTTTCCTAACATTGC
GCGAAAGGCTATCTCAAAGTTGTTCAGCGGACACCTTGTGGAACCATTCC
CAGAAATCCAAACATTGGTGTTGCCAAAGTGGGAGCTGCCTGGCTACTTG
CTACAGTTCTTTACCTGTGGGAATTACTGAAAGGTTTCCGTGCAGATCTT
TGGGAATCTCTAACTTTTACACTTTATATTCTCCGGGACACTCGCACCCA
TGGGTACCTCAACTCCTTAGTTCTCGCACAGCGCATCCGCTGTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_j04.g1 MSMg01no140_j04.g1 CHROMAT_FILE:
MSMg01no140_j04.g1 PHD_FILE: MSMg01no140_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:20 2005
         (444 letters)



>mm_chr13_60182403_60183246
          Length = 844

 Score =  774 bits (400), Expect = 0.0
 Identities = 433/444 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccattgtcatttctattgtccatcatcgggttttctagtttgtaaatatccgtccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccattgtcatttctattgtccatcatcgggttttctagtttgtaaatatccgtccttc 260

                                                                       
Query: 61  ctcacctctctggctactgactggttgtaataaagatctgatgaccaacagacaggcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacctctctggctactgactggttgtaataaagatctgatgaccaacagacaggcagg 320

                                                                       
Query: 121 aaatagggaacataacttccgggcagagaggatgatgtgagggaagaaattgtgggagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatagggaacataacttccgggcagagaggatgatgtgagggaagaaattgtgggagaa 380

                                                                       
Query: 181 tcgggtgctgacacaggggaacagatggaccagagcagagcagagaaaggtgtgcagcca 240
           ||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||| |
Sbjct: 381 tcgggtgctgaaacaggggaacagattgaccagagtagagcagagaaaggcgtgcagcta 440

                                                                       
Query: 241 gccacatggtgggtcacgggcaagatagttaggttaacttagatgaggtagattcatgac 300
           |||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 441 gccatatggcgggtcacgggcaagatagttgggttaacttagatggggtagattcatgac 500

                                                                       
Query: 301 tgttctatcgaaaggcttaagctccgtgtcattgtttaatagctggctggtctgcaaagt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttctatcgaaaggcttaagctccttgtcattgtttaatagctggctggtctgcaaagt 560

                                                                       
Query: 361 cctttcctaacattgcgcgaaaggctatctcaaagttgttcagcggacaccttgtggaac 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctttcctaacattgcgtgaaaggctatctcaaagttgttcagcggacaccttgtggaac 620

                                   
Query: 421 cattcccagaaatccaaacattgg 444
           ||||||||||||||||||||||||
Sbjct: 621 cattcccagaaatccaaacattgg 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)