BAC Information

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BAC

Clone NameMSMg01-141G23
Chromosome13 (Build37)
Map Location 18,809,597 - 18,810,305
singlet/doubletsinglet
Overlap geneVps41
Upstream geneCdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G23.T7 (MSMg01no141_g23.b1)MSMg01-141G23.TJ (MSMg01no141_g23.g1)
ACCAG346308AG346309
length1,0641,175
length of high quality
(start - end)		657 (88 - 744)709 (89 - 797)
definitionCHROMAT_FILE: MSMg01no141_g23.b1 PHD_FILE: MSMg01no141_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:49 2005CHROMAT_FILE: MSMg01no141_g23.g1 PHD_FILE: MSMg01no141_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCCATNNNNAATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATCTGAGGAATACCCCTTGAATGAGAAGCACCTGAAA
AAATGTTCAACATCCTTCCCCATCAGAGAAATGCACATCAAAACAACCCT
GAGATTCCATCTCACACCAGTCAGGATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TAGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTT
CCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTTC
TGGGCATATATCCAGAACATGTTCCAACTGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTAGAAAGAACA
CAGATGCCCCTCAACAGAGGAATTGATACAAAAAATGTGGTACATTTACT
CAGCTATTAAAAGGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGAC
CTGGAGGGCATCATCCTGAGTAAGGTAACACAATCACAAATGATATGTAC
TCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCAAGATATAA
GATACAGTTTGCAAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTG
TGGACACTTTGCCCCTTCTTAGAATTGGGAATCATCACCCATGGAAGGAG
TTACAGAGACAAAGTTTGTATCTGAGACAAAAGTATAGACCATCTAGAGC
CTGCCATATCCAGGGATCCATCCCATAATCAGTCCTCCAATGATGATACC
ATTGCATACACTAACAAGAATTTGCTGAAAGGACCCTGAATAAGCTGGCC
TCTTGTGAAAAATAGGCCGGGGGCCCTAGTCAAACCCATTAGTTAGATCT
CTTCCAAGTCCAGCTTTATTGGGAAGGGAATTCCCAAGGGCCCCCCCCAA
ATTGGAAGGGAATTCTTATAAAAAAAATTTTTTTCCCTCATCGGGATCCT
TTTAACGAAAATAA

NCCCCTCCTTTANNNATAGCATGGATGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAGAAGGACCAAAT
GCCATGTGTGAGGATCTTTTTCACCTCGAAAGCACTGCACAACTGTGAAT
CAGGTTATCTGCCTGATTTTCTACATTTTAACATCAGACAGCCTTGGCAA
ATTCCTCTTCTGCATGAGTGGGAATACAAGGGCTACTCCATATTTCTATC
ACACTGGGTCTAATCTAAAAACTTAACTTGGATGTTTGTTTTACTACAAA
ACCACAACTGTATTTCAACGTGAAATGAAAATGCTCAATGTGAAAAGCCA
CCTTGCAGTAGTCAAACTAAGCAAGGTCTGCTGGGAAGGAAAACTCTTTT
GCCTCGGACCTGCACTGCAAAAGACAGTTTGCACAAATGATAGTAAAGAG
GCTCTTGTTAACGTAATGACAAAACCCAAATTTTTCCTTGTCAAATTCCG
TAACTTTTGGCACACTCAAAATAAAGCACAGATGTGAACAGTAAAAAGTC
CACTAGTAAATGTCTCTTAGGACAGTAAACAGAGCATCACCATGCATGTC
TTAAGGAACATCACAGAAACTGGCAAGCAGGGCATTTAATATATGAGGGG
GAAATATGGTAGATGATACATACATATATATGCTTCTATGTGTGTGTGTG
TATACATATATGTATATGCATATACACACATACACATATATACATATACT
TAAGGAATCTCTTCCGAGTTTTAGCCTGAGTCTTCTATTTTGTTAGTTTC
ATTTAATTTTGTCCTTCGCCCTATATCAGAACGTCTGTATGAAAAAAAGG
CAATATTTTGTACTCAGCACCCTCATGCCACTTCTCAGCTATAGCTGGAC
GTTTCCATCTACGTCTTGCCAGCAACGGGAAATAATCCTAAAAGCCTTGC
ATAACAATTCCACTCTTAAACTTGCCTTTTTCAAAAAAACCCAATTAAAC
ATTAAACCAAAAAGGGCTTAAACCCAAGCCAAAGGTCCGTCTTCGAAAAA
AAAGGGTTTGTGAAAAAGGTGTTTTCCCGCCCGGAAAAAAGGGTTATCCC
CCAATTTTCTCCCGGGTAAAAAATTTGCCCACTTTCCCTGTGAAATTCTC
CGCGTTCCCAAAAACACCCTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g23.g1 MSMg01no141_g23.g1 CHROMAT_FILE:
MSMg01no141_g23.g1 PHD_FILE: MSMg01no141_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:49 2005
         (709 letters)



>mm_chr13_18809529_18810637
          Length = 1109

 Score = 1355 bits (701), Expect = 0.0
 Identities = 707/709 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaggaccaaatgccatgtgtgaggatctttttcacctcgaaagcactgcacaactgtga 60
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 777 gaaggaccaaatgccatgtgtgaggatctttttaagctcgaaagcactgcacaactgtga 718

                                                                       
Query: 61  atcaggttatctgcctgattttctacattttaacatcagacagccttggcaaattcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atcaggttatctgcctgattttctacattttaacatcagacagccttggcaaattcctct 658

                                                                       
Query: 121 tctgcatgagtgggaatacaagggctactccatatttctatcacactgggtctaatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctgcatgagtgggaatacaagggctactccatatttctatcacactgggtctaatctaa 598

                                                                       
Query: 181 aaacttaacttggatgtttgttttactacaaaaccacaactgtatttcaacgtgaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaacttaacttggatgtttgttttactacaaaaccacaactgtatttcaacgtgaaatga 538

                                                                       
Query: 241 aaatgctcaatgtgaaaagccaccttgcagtagtcaaactaagcaaggtctgctgggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaatgctcaatgtgaaaagccaccttgcagtagtcaaactaagcaaggtctgctgggaag 478

                                                                       
Query: 301 gaaaactcttttgcctcggacctgcactgcaaaagacagtttgcacaaatgatagtaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaaaactcttttgcctcggacctgcactgcaaaagacagtttgcacaaatgatagtaaag 418

                                                                       
Query: 361 aggctcttgttaacgtaatgacaaaacccaaatttttccttgtcaaattccgtaactttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggctcttgttaacgtaatgacaaaacccaaatttttccttgtcaaattccgtaactttt 358

                                                                       
Query: 421 ggcacactcaaaataaagcacagatgtgaacagtaaaaagtccactagtaaatgtctctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggcacactcaaaataaagcacagatgtgaacagtaaaaagtccactagtaaatgtctctt 298

                                                                       
Query: 481 aggacagtaaacagagcatcaccatgcatgtcttaaggaacatcacagaaactggcaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aggacagtaaacagagcatcaccatgcatgtcttaaggaacatcacagaaactggcaagc 238

                                                                       
Query: 541 agggcatttaatatatgagggggaaatatggtagatgatacatacatatatatgcttcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agggcatttaatatatgagggggaaatatggtagatgatacatacatatatatgcttcta 178

                                                                       
Query: 601 tgtgtgtgtgtgtatacatatatgtatatgcatatacacacatacacatatatacatata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgtgtgtgtgtgtatacatatatgtatatgcatatacacacatacacatatatacatata 118

                                                            
Query: 661 cttaaggaatctcttccgagttttagcctgagtcttctattttgttagt 709
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cttaaggaatctcttccgagttttagcctgagtcttctattttgttagt 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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