BAC Information

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BAC

Clone NameMSMg01-141M04
Chromosome13 (Build37)
Map Location 74,934,237 - 74,934,924
singlet/doubletsinglet
Overlap geneCast
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream geneEG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M04.T7 (MSMg01no141_m04.b1)MSMg01-141M04.TJ (MSMg01no141_m04.g1)
ACCAG346550AG346551
length1,2471,222
length of high quality
(start - end)
689 (90 - 778)668 (133 - 800)
definitionCHROMAT_FILE: MSMg01no141_m04.b1 PHD_FILE: MSMg01no141_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:32 2005CHROMAT_FILE: MSMg01no141_m04.g1 PHD_FILE: MSMg01no141_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCCNTNNNNAGCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCCTGTACATAATTTGGTCCGTATAAAGCCCGTTTTTCTCAAAT
ATAGAGACATTCTAAGACCTACAGACACGTGGGCTGCCACAGGAAAAAGA
AAAAAACACTTAACACCAGCATCTTTAAATACAGTGGGACAAAGAAGTCT
CCCAAAACCTGTTATCAAATCTATTTAAAGTATTTGACTTACACATCTGG
CCACAGTGGGGGAGTATGAGCTTTTTAGAAATTTACTTCAGTAATGCCCT
GGAAAGCAAAATTTGAAGACAACATGAAAGGATATGATCTTTCAGAGACA
AGTTTAAAATCTTCAAATTTAGTGATGGACGTGTTCTGTAACTAAAGAGC
TGTGTTGGTATCTTTGAAGGGGAATGGTCGTTTATATGTTTATCTTGCTG
GAATAGCCTGGCTAGTCTTTTCTTCCTCATCATTATTTACTTCTCCTTAT
ATTATTTGTAAGTCCATTATTGAACGATTCACGTTTCTGATACTACTCTT
TTTAACGAAGTCAGTCTTTTTCTTTTTAAATCAGAGAATTAATATATACT
GCTATAAAATTTTGTTTATATATTTAAATTAATGTCATATATTCATAGTT
GTTAAATATGTTGTTGATTTTTTATTAACTCTTTAAAACTCCTGCATCTA
AATATAATTATTGGAAAACAAATTTAAAGGAACCAGTATCATCTCTACTA
TCTAAAACCCAGAAAGATGGTCAGCTTTTTATCTTTGTGCATTTACTTAA
GCCTTTGTAACACCACCATATATCCATTTTTATGGAAGGAATGACTTCAG
GCCCAGCCATGACTAATGAACTCCATGGATGCTCACATTCCTTTAAAATG
TAACTTAGGAAGGTTCATTTAATCAAATCCCTTTCCAAAATCCTCTGTCA
CCTTCTAAAATATTAAAAAAGCCTTATACCCCAGTTTAATGGTCTTTTGA
GGAACTATTGTATGATTTTATTTTTTTGGAAAAAATTCCCGGTGTGGAAA
ATTTTCGGGGTTTCTATAATCCTTGTAATTTATTCCTTGAAATAATTTTA
ATCTCCTGTGTTTTTTGAAATTTTTTACAATGTATTTGTGTTGTTGTCTT
ACTTATCCCTGCAATCACCTGCATTTTTTTATTTACAATTCTCCCTTTCA
TTATTAATATATATTGATCTTTTTTTATTTTAATATTTCATTCTCTT
NCCGTCTCTTTNNNAAACATGGATGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATAAAAACCCACCCTTTAAN
CAATTAAAATAGGATTGAACCCTAAAAAATGAACCTTCCCCACAATGGTC
ACTTGATCTTTGACAAAAGATCTAAAAACAACCAGTGGACAAAAGACAGC
CTTTTCAACAAATGGTGCTGGTTCAACTGGATGTCAGCGTGTAGAAGACT
GCAAATTGATCCATTCTTATCTCCTTGTATGAAGCTCAAGTCCAAGTGGA
TCGAAGACCTCCACATAAAACCAGATACACTGAAACTAATAGAAGAGAAA
TGGGGAAGAGCCTCGAACTCATGGGCACAGAGGAAAATGTCCTGAACAGA
ACACCAATGGCTTATGCTCTAAGATCAACAATAGACAAATGGAACCTCAT
AACATTATAAAGCTTCTGCATGGCAAAGGACACTGTCAGTAGGCCAAAAT
GGCAACCAATAGATTAGGAAAAGATCTTTAGCAATCCTACATGTGACAGA
GGGCTAATATCCAATATATACAAAGAACTCAAGAAGTTGGACTTCAGAGA
ATCAAATAATCCTATTAAAAATGGAGTACAAAAAAAATGGAGTACAGCCA
ACATGTGTTATCACCTAAGCTTTTGATCTTACTTATTCTGATTGGTGTAA
GGTAGAATCTCCGGGTTGTTTTGATTTGCATTTCTCTGGTCATGAAGGAC
TTTGAACATTTTCTTCGGTGTCTCTCAGTCATTTGAGATTCCTCTTTTCT
GAGTTCTCAGTTTAGTTCTATACTCCATTTTTGGGATTTGTTGTTGTTGT
TGTTGTTTTGTTTTTTGGCGGTTATCTTTCTGAGTTCTTTAATTTTTTTG
GATATAACTCCTTATCGAGGTTGACATACTTAATAATTTTTTTCCCTTCT
CGAACCTTCACATTTGTTTTATTTACATTTCCTTCTTATTCAAACATTTT
CCTTTTTTCCTGGTTTCTCCATTTCTTATTTCTAGATTCCTATTACCTCT
CCCTTTTTAATTGTTTTATCTTTATTTCTTTCTTCTTTACACTAAATTAT
ACTCTTTATCCCCCTCTTTACTCTTCTCAATTATCTATGCTCTTACTTTT
TGTTTGTTTCGTGTATTAATTTTATTTTTACCTTTTATTTCTCTGTATAC
TTTATTCTTCTTGCTTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m04.b1 MSMg01no141_m04.b1 CHROMAT_FILE:
MSMg01no141_m04.b1 PHD_FILE: MSMg01no141_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:32 2005
         (689 letters)



>mm_chr13_74934212_74935300
          Length = 1089

 Score = 1162 bits (601), Expect = 0.0
 Identities = 667/689 (96%), Gaps = 1/689 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctcaaatatagagacattctaagacctacagacacgtgggctgccacaggaaaaag 60
           ||||||||||||||| |||||||||||||| || |||||||||||||  |||||||||||
Sbjct: 713 ttttctcaaatatagggacattctaagaccaaccgacacgtgggctgagacaggaaaaag 654

                                                                       
Query: 61  aaaaaaacacttaacaccagcatctttaaatacagtgggacaaagaagtctcccaaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaaaaaacacttaacaccagcatctttaaatacagtgggacaaagaagtctcccaaaacc 594

                                                                       
Query: 121 tgttatcaaatctatttaaagtatttgacttacacatctggccacagtgggggagtatga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 593 tgttatcaaatctatttaaagtatttgacttacacatctggccgcagtgggggagtatga 534

                                                                       
Query: 181 gctttttagaaatttacttcagtaatgccctggaaagcaaaatttgaagacaacatgaaa 240
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 533 gctttttagaaatttactttagtaatgccctggaaagtaaaatttgaagacaacatgaaa 474

                                                                       
Query: 241 ggatatgatctttcagagacaagtttaaaatcttcaaatttagtgatggacgtgttctgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 473 ggatatgatctttcagagacaagtttaaaatcttcaaatttagtgatggatgtgttctgt 414

                                                                       
Query: 301 aactaaagagctgtgttggtatctttgaaggggaatggtcgtttatatgtttatcttgct 360
           ||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct: 413 aactaaagagctgtgttggtagccttgaaggggaatggttgtttatatgtttatcttgct 354

                                                                       
Query: 361 ggaatagcctggctagtcttttcttcctcatcattatttacttctccttatattatttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggaatagcctggctagtcttttcttcctcatcattatttacttctccttatattatttgt 294

                                                                       
Query: 421 aagtccattattgaacgattcacgtttctgatactactctttttaacgaagtcagtcttt 480
           |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 293 aagtccattattgaacaattcacatttctgatactactctttttaatgaagtcagtcttt 234

                                                                       
Query: 481 ttctttttaaatcagagaattaatatatactgctataaaattttgtttatatatttaaat 540
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 233 ttctttttaaatcagagaattaatatatactgctacaaaattttgtgtatatatttaaat 174

                                                                       
Query: 541 taatgtcatatattcatagttgttaaatatgttgttgattttttattaactctttaaaac 600
           |||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct: 173 taatatcatatattcatagctgttaaatatgttgctgattttt-attaactctttaaaac 115

                                                                       
Query: 601 tcctgcatctaaatataattattggaaaacaaatttaaaggaaccagtatcatctctact 660
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 114 tcctgcatctaaatataattattggaaaacaaatttaaagaaaccagtatcatctctact 55

                                        
Query: 661 atctaaaacccagaaagatggtcagcttt 689
           |||||||||||||||||||||||||||||
Sbjct: 54  atctaaaacccagaaagatggtcagcttt 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)