BAC Information

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BAC

Clone NameMSMg01-141M14
Chromosome13 (Build37)
Map Location 116,965,535 - 116,966,148
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174
Downstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M14.T7 (MSMg01no141_m14.b1)MSMg01-141M14.TJ (MSMg01no141_m14.g1)
ACCAG346569AG346570
length1,2481,232
length of high quality
(start - end)
681 (90 - 770)616 (141 - 756)
definitionCHROMAT_FILE: MSMg01no141_m14.b1 PHD_FILE: MSMg01no141_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:35 2005CHROMAT_FILE: MSMg01no141_m14.g1 PHD_FILE: MSMg01no141_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCACCCCTTNNNNCACACTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCAACACACCACTTTCACCCCGTTAAGAGCGTGGAAACAGAAA
CTAAACAGGGACACAGCCCTTTTAACAGAAGTTATGACCCAAATGGACCT
GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCT
TCTCAGCACCTCACGGGACCTTCTCCAAAACTGACCATATAATTGGTCAC
AAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCT
ATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATG
GAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACC
TTGGTCAAGGATTTAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAA
TGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCAT
ATCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAG
GCAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAA
GGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCA
GGGGTGAAATCAACCAAGTGGGAACAAGAAGAACTATTCAAAGAATTAAC
CAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTT
AGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCA
GAATTGAAAAGGGAGACATTACCACAGATCCTGAAGAAATCCCAAACACC
ATCAAATCCTTCTACAAAAGGCTATACTTCCACAAACTGGAAAACCTGTA
CGAAATGTACAAATTTCTGGACAGATACCCAGTACCAAAGTTGAATCTAG
GATCAGTTGAACATTCTAAACAGCCCCTTTATCCCTTAAGAAAATAAAAG
CCGTTATTAATAACCTCCCCCAACCAAAAAAAGCCCCAGGAACCAAAAGG
GGTTTAAGGGCAAAATTTTATTAAAACCTTCCAAAAAAAAATTAATTCCC
ATTTTGGCACCAACCATTTTTCCAAAAAAAAAAATTAAAGGTGACCTTCC
CCCACCTCTTTTTATGAGAACCCTTTTATATCCTTGAATCCAAACCCCCA
AAAGTACACCCCCATAGAAGAAGGACATTTCTACACACATTTTCTTTA
NCCAATTCTTNNNNAAACATGGCAGGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAAGCCTCCCTAACTGAA
TGTGTAAATGCTTCATTACCTTAAGAATGCATTTTTGCCCAGAAAAGTGG
ACTGAATTGTTACCTCATATATTTTTACAATAGGTTATGCAATGAATTTC
ATTTTTTGGTTTGGTTTCGGGTTTTCTGAGACAGGGTTTCTCTCTGTAGC
CCTGTCTGTCCCAGAACTCACTCTGTAGACCAGGCTGGCCTCCTGAGTGC
TGGGATTAAAGGTATGCACCACCACATCCCAGCTGAAATGAGGATCTCTT
GAGGAAGTAAAATTAAATTGTACTCAAAAGATTTAAAACCTAAATTAAGA
GTTTCTAATCTTTTTATCCATAAAGAAAAACAACTTTTCAGTGTGTAATA
ATAATATTTACGGTACTCTAGATACTTTGAAAAAATAAACAGTAAAAGTC
TATAGATATTTGATAATGTTTATTTAAACCACACTTGCTAGCCTTTCAAA
CTCACCTATGCATTTTAATAATTTCACCTAACATTTTCAAGGGACTCAGA
TTTGGATATACTGTATAAGATGAAGTTTATTCCCCAAGAAGACTCTTTCC
CACAGTCTAGAAACCAATTTGAGTCAGTACTGATTCAAAGATAGATTCCT
TTTTACTGTTCCTGTAACTATTTGGACCAACCAGCAATTAAAGGGTTATT
GAGAGGTAGAAGTTGAGCTTCAGATGAGCATTTCCCAGTGTCACATATCT
TTAGCAGTAAGCGTGGAAGCCAACTAGGAAAGAACACGTTTGAAGTTGCA
GAACTAATCATGCAGAAGCAATTTGCGATTTTCCCCCTCAGCCCAATAAA
GCAAAGCATTATGACTTTGGCTGTGAAAAACAAGTCAATTTTTTGTGAAA
ACCCCGCTATAAACTAACACTTTCAAAAAACTTTTAACCTGGTATGCCGA
AAACGGAATTACCCCATTTGTTTCCCTAAAAAATGGGTTAAAGGAAGGGC
AACATTCCTTTTAAATGCCCCCCTATTTGTTTTTTGATTTTTTTTCTCCC
AAATTCTTTTTAAATATACCCCTTTCCAAAAAGCTGAATAATCTTCTCCT
CCTTTAAAAAAAAATTCTTTCGCCCCTCTTTTGCTATTTTTTTTTTTCCA
TAGATATAATATTTTGTTTGGTATAATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m14.g1 MSMg01no141_m14.g1 CHROMAT_FILE:
MSMg01no141_m14.g1 PHD_FILE: MSMg01no141_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:35 2005
         (616 letters)



>mm_chr13_116965140_116966153
          Length = 1014

 Score = 1114 bits (576), Expect = 0.0
 Identities = 606/616 (98%), Gaps = 2/616 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaaaagtggactgaattgttacctcatatatttttacaataggttatgcaatgaatttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 agaaaagtggactgaattgttacctcatatatttttacaataggttatgcaatgaatttc 950

                                                                        
Query: 61   attttttggtttggtttcgggttttctgagacagggtttctctctgtagccctgtctgtc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  attttttggtttggtttcgggttttctgagacagggtttctctctgtagccctgtctgtc 890

                                                                        
Query: 121  ccagaactcactctgtagaccaggctggcctcctgagtgctgggattaaaggtatgcacc 180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 889  ccagaactcactctgtagaccaggctggcctcctgagtactgggattaaaggtatgcacc 830

                                                                        
Query: 181  accacatcccagctgaaatgaggatctcttgaggaagtaaaattaaattgtactcaaaag 240
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 829  accacatcccagctaaaatgaggatctcttgaggaagtaaagttaaattgtactcaaaag 770

                                                                        
Query: 241  atttaaaacctaaattaagagtttctaatctttttatccataaagaaaaacaacttttca 300
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 769  atttaaaacctaaattaagagtttctaaactttttatccataaagaaaaacaacttttca 710

                                                                        
Query: 301  gtgtgtaataataatatttacggtactctagatactttgaaaaaataaacagtaaaagtc 360
            |||  |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct: 709  gtgcataataataatatttacagtactctagatattttgaaaaaataa-cagtaaaagtc 651

                                                                        
Query: 361  tatagatatttgataatgtttatttaaaccacacttgctagcctttcaaactcacctatg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  tatagatatttgataatgtttatttaaaccacacttgctagcctttcaaactcacctatg 591

                                                                        
Query: 421  cattttaataatttcacctaacattttcaagggactcagatttggatatactgtataaga 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 590  cattttaataatttcacctaacattttcaagggactcagatttggatatactgtataag- 532

                                                                        
Query: 481  tgaagtttattccccaagaagactctttcccacagtctagaaaccaatttgagtcagtac 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  tgaagtttattccccaagaagactctttcccacagtctagaaaccaatttgagtcagtac 472

                                                                        
Query: 541  tgattcaaagatagattcctttttactgttcctgtaactatttggaccaaccagcaatta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  tgattcaaagatagattcctttttactgttcctgtaactatttggaccaaccagcaatta 412

                            
Query: 601  aagggttattgagagg 616
            ||||||||||||||||
Sbjct: 411  aagggttattgagagg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1014
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1004
Effective search space:   608424
Effective search space used:   608424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)