Query= MSMg01no142_b09.b1 MSMg01no142_b09.b1 CHROMAT_FILE:
MSMg01no142_b09.b1 PHD_FILE: MSMg01no142_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:17 2005
(608 letters)
>mm_chr13_47121420_47122427
Length = 1008
Score = 797 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Plus
Query: 197 ccttggtccagcctcaggctggccttgaattttctttcctcccaactcagctactggagt 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccttggtccagcctcaggctggccttgaattttctttcctcccaactcagctactggagt 456
Query: 257 gctgggattacaggtgtgcccaccctgcttgatttgctggccttatttatttaaagagag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gctgggattacaggtgtgcccaccctgcttgatttgctggccttatttatttaaagagag 516
Query: 317 cataagtggggccaggagatggttcagcagcttatgcattccctgctctcacacaagatc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cataagtggggccaggagatggttcagcagcttatgcattccctgctctcacacaagatc 576
Query: 377 caagtttgctcacaactgcctggggctctgatgtctctggcctctatagacatccgcaca 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 caagtttgctcacaactgcctggggctctgatgtctctggcctctatagacatccgcaca 636
Query: 437 tacccatacagacacatatacacagaaacatggttaaaataattaaagtaaatctttaaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tacccatacagacacatatacacagaaacatggttaaaataattaaagtaaatctttaaa 696
Query: 497 agtaaacataaggagtataatgtctaccctatgatcagggtgcttgctgcctgccacctg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agtaaacataaggagtataatgtctaccctatgatcagggtgcttgctgcctgccacctg 756
Query: 557 cctgccagcctgaaccaatgcacagaattgagggagagaactggcttcctgc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cctgccagcctgaaccaatgcacagaattgagggagagaactggcttcctgc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_b09.g1 MSMg01no142_b09.g1 CHROMAT_FILE:
MSMg01no142_b09.g1 PHD_FILE: MSMg01no142_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:17 2005
(637 letters)
>mm_chr13_47287398_47288434
Length = 1037
Score = 1104 bits (571), Expect = 0.0
Identities = 622/645 (96%), Gaps = 12/645 (1%)
Strand = Plus / Minus
Query: 1 ccagggctacacaaagaaagcctatcttg----ccttacaaaacacaaaaaaaggaacct 56
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 769 ccagggctacacaaagaaagcctatcttgaaaa----acaaaacacaaaaaaaggaacct 714
Query: 57 aaaatcatacaaccagaagacatttgagcttgcaaagtcctagttattttaacccaaaca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aaaatcatacaaccagaagacatttgagcttgcaaagtcctagttattttaacccaaaca 654
Query: 117 aatgagtttaaagagggtatttaggggctgggcgagaccacacctgtgataggatcaaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aatgagtttaaagagggtatttaggggctgggcgagaccacacctgtgataggatcaaaa 594
Query: 177 ttggtttagtgagaaaaatatgtattagcaaaaagtgaggaggatgaagagctaacttca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttggtttagtgagaaaaatatgtattagcaaaaagtgaggaggatgaagagctaacttca 534
Query: 237 gattgaatgggacttagggtcccaagtaacctaccccccagaaagattcttggtgctgta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gattgaatgggacttagggtcccaagtaacctaccccccagaaagattcttggtgctgta 474
Query: 297 accattcctgatggaggagagacaggtaatataaacagagcgcctcctaacagaccagct 356
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 473 accattcctgatggaggagagacagggaagataaacagagcgcctcctaacagaccagct 414
Query: 357 catgcctcagtgttgataccaatcttctgagcctcaagccaaagttcaacacagagtcca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catgcctcagtgttgataccaatcttctgagcctcaagccaaagttcaacacagagtcca 354
Query: 417 ctttttacatcaccctgcaattaaggtgtgggctcttatcagccggataaggggagaagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ctttttacatcaccctgcaattaaggtgtgggctcttatcagccggataaggggagaagc 294
Query: 477 cacagccaatatgaaagaaaatacaggccaggcacaatcatgctgctttttggacaccga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 293 cacagccaatatgaaagaaaatacaggccaggcacaatcatgctgctttttggacacaga 234
Query: 537 gaactgaaccacatcaaagtggatgcaaatttacaa----gaaagaaagaaagaaagaaa 592
||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 233 gaactgaaccacatcaaagtggatgtaaatttataaaaaagaaagaaagaaagaaagaaa 174
Query: 593 gagagagagaaagagagagagagagagagagagagagagagagag 637
|| ||| ||||||| ||| ||| ||| ||||||||||||||||||
Sbjct: 173 gaaagaaagaaagaaagaaagaaagaaagagagagagagagagag 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
