BAC Information

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BAC

Clone NameMSMg01-142K02
Chromosome13 (Build37)
Map Location 118,925,929 - 118,926,465
singlet/doubletsinglet
Overlap genenone
Upstream geneEmb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142K02.T7 (MSMg01no142_k02.b1)MSMg01-142K02.TJ (MSMg01no142_k02.g1)
ACCAG347192AG347193
length1,1931,236
length of high quality
(start - end)
579 (90 - 668)698 (92 - 789)
definitionCHROMAT_FILE: MSMg01no142_k02.b1 PHD_FILE: MSMg01no142_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:33 2005CHROMAT_FILE: MSMg01no142_k02.g1 PHD_FILE: MSMg01no142_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATTCTNNNNNNCTACAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCACTTATGCTAATGAGCCCTTATAACTTTAATCTAAAGTT
CCTGAAAAAGTTTAACAATCCTACTCTATGTTTTATACCCCACTAATGGT
TACTCACATCTCTCTTTAAATGCTTCTAGATAATGTTCAGTAGTAAGTGC
CAGGCATCCTGGTATGAGGTCATCACATTTGTGGCAACAAAAATATGAAT
AGCCTTCATCTTTGATGGAAATGCCTTCTGAACTGGCTGGTGGCCTTCCT
TCCTTTCTTAGTTTCTTTTCATCCCAGATTGGCTGCTTCCTTGTTTAATT
ATTTCTGATCCTTAAAAACCTGCTGTACAGAAATACAAGAAGTGGAGGAT
GAAGAGTGATAATGCTCTTCAGAATGAAATATATGGTTTTCTTCATAGTA
GAATCATATCCTATAGTTATGATTGGCAGCCAAGAACAATGGTAATAACA
TGCATTTTCTTTGGTTCCTCTGGGACCCATACGATCATACAGATACAGCC
TGTCTGGCACTGGGCTAATTATTTAATATCCTCTCTTCTAGGAACACCAT
TGTTTACTAGGGTTGTATGGGTCTGTTCACACACCGTTTAAAAATTTTAT
ATTGATCTTCCTTCTGGTCAGTGCCTATTACAGCAACAGTCATAGGTCAG
TGAACAATGCTTCACCCACAGCTCTGCCTTGTCTGACTTGTCTGCTTTCT
TATTAGTCTGTCTATATTCTATAAATCTTTTTTTATCTTTTTCTATATAC
TTATTCATAGCATAACGCTTGTTTATTAATCTTGTTCCTTATTTATTTTT
TTAATATTGTTCTATTATTATTTTTTTTTTCTTATATCTTAATGTCCCTT
ATAATCTTTGTTTTTTTTTTTGTATTCTATTATTATTTTATTTTTTCTCT
CATTTCTTTTCTTATTTTCTTTTTTATTTCATTATTTCTTTATTTTGTCT
TATTTTCTTTAAACTTTTCTATATTATTTTCTTCTTTATTTTTTATTCTT
ATTTTTTTTTTATTCTTTTTTCTTCTTTTTCTTTTCTCTTTTTATTCTTA
TTCCTGCTTTCTTCTTCTTTCCTTGTTCTTCATTTATATTTTACTCTTAT
CTTCTTTTTTTTCTTTTTTTCTTTTTATATTTCTTTTTTCTTT
NCCAATCTTNNNNNNTAACATGGTAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTACATCCACCAGAGACT
CTGAAACATATAGAGGAGAACGTGGGGGAAAGCCTCGACCACATGGGCAC
AGGGGGCAAATTCCTGAACAGAACACCAATGGCTTGTGCTGTAAGATTGA
GAATTGACAAATGGGACCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAA
CATACTGTCAATAACACAAAAAGGCCACCAACAGAGTGGGAAAGGATTTT
CACCAATCCTAAATCCGATAAGGGACTAATTTCCAATATATACAAAGAAC
TCAAGAAGCTGGACTCCAGAAAGTCAAATAACCCCATTAAAAAATGGGGC
ACAGAGCTAAACATTGAATTCTCAACTAAGGAATACCAAATGGCTGATAG
CCAGAAACTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAG
AAAATGTATCCATTTACATAATGGAGTACTACTCAGCTATTAAAAACAAT
GAATTTATGAAATTCTTAGGCAAATGGATGGATCTGGAGGATATCATCCT
GAGTAAGGTAACCCCATCACAAAAGAACACACATGATATGCACTCACTGA
TAAGTGGATATTAACCCAGAAACTTAGAATATCCAAGATACAATTTGCAA
TACACATGAAACCCAAGAAGAAGGAAGACCAAAGTGTGGATACTTCGTCC
CTCCTTAGAATGGGGAACAAAATACCCATGGAAAGAGTTACCTAGACAAA
GTTTGGAGCTGAGAGGAAAGGATGCACCATCCAGAGACTGCCCCACCTGG
GGATCCCTCCCATAAACCACCCACCAACCCAGACCCTATTGCATATTCCA
ACAAGATTTTTCTGACCGCACCCTGATATAGCTTGTTCCCGGGGAAGCTC
CTGCCCGTGCTCTGTCAAATTCATATATGGACTGCCTCCCAGTCTTCCTC
TTAAATGGGAACCCCGGCCCCCCCCCTGGGTTGCTCTTACATACATTTCC
CTCTTCTTCTTTTAACACTTTCCCTCTCCCCTCTTTTTCCTTATAGCTCT
ATTTTTACTCTTCTTCCTGCTCCTCCCTTCTATTTGTTTCCTCCTTCTCC
TCTTATCTCTTCCTTCAATATCTTTCTCCTTCTCCTCCATCTTTTCTCTT
TTCTCTTCTTCATCTTTCNTCTTTCTTCTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_k02.b1 MSMg01no142_k02.b1 CHROMAT_FILE:
MSMg01no142_k02.b1 PHD_FILE: MSMg01no142_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:33 2005
         (579 letters)



>mm_chr13_118925929_118926907
          Length = 979

 Score =  980 bits (507), Expect = 0.0
 Identities = 530/541 (97%), Gaps = 8/541 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctaaagttcctgaaaaagtttaacaatcctactctatgttttata---ccccactaa 57
           ||||||||||||||||||||||||||||||  ||||||||||||||||       |||||
Sbjct: 537 aatctaaagttcctgaaaaagtttaacaattatactctatgttttatagag----actaa 482

                                                                       
Query: 58  tggttactc-acatctctctttaaatgcttctagataatgttcagtagtaagtgccaggc 116
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggttactctacatctctctttaaatgcttctagataatgttcagtagtaagtgccaggc 422

                                                                       
Query: 117 atcctggtatgaggtcatcacatttgtggcaacaaaaatatgaatagccttcatctttga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcctggtatgaggtcatcacatttgtggcaacaaaaatatgaatagccttcatctttga 362

                                                                       
Query: 177 tggaaatgccttctgaactggctggtggccttccttcctttcttagtttcttttcatccc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggaaatgccttctgaactggctggtggccttccttcctttcttagtttcttttcatccc 302

                                                                       
Query: 237 agattggctgcttccttgtttaattatttctgatccttaaaaacctgctgtacagaaata 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agattggctgcttccttgtttaattatttctgatccttaaaaacctgctgtacagaaata 242

                                                                       
Query: 297 caagaagtggaggatgaagagtgataatgctcttcagaatgaaatatatggttttcttca 356
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 241 caagaagtggaggatgaagagtgagaatgctcttcagaatgaaatatatggttttcttca 182

                                                                       
Query: 357 tagtagaatcatatcctatagttatgattggcagccaagaacaatggtaataacatgcat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagtagaatcatatcctatagttatgattggcagccaagaacaatggtaataacatgcat 122

                                                                       
Query: 417 tttctttggttcctctgggacccatacgatcatacagatacagcctgtctggcactgggc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttctttggttcctctgggacccatacgatcatacagatacagcctgtctggcactgggc 62

                                                                       
Query: 477 taattatttaatatcctctcttctaggaacaccattgtttactagggttgtatgggtctg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taattatttaatatcctctcttctaggaacaccattgtttactagggttgtatgggtctg 2

            
Query: 537 t 537
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)