Query= MSMg01no143_b04.b1 MSMg01no143_b04.b1 CHROMAT_FILE:
MSMg01no143_b04.b1 PHD_FILE: MSMg01no143_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:31 2005
(554 letters)
>mm_chr13_56572809_56573761
Length = 953
Score = 1017 bits (526), Expect = 0.0
Identities = 544/550 (98%), Gaps = 1/550 (0%)
Strand = Plus / Plus
Query: 5 gaattccaacactcacacgcttcgccggctctttgccccctttatataaaataaaaagag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacactcaca-gcttcgccggctctttgccccctttatataaaataaaaagag 263
Query: 65 ggtagttgcacatttcacaagattaaagctcttggtgaagcgtccttgtgtttggatgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtagttgcacatttcacaagattaaagctcttggtgaagcgtccttgtgtttggatgaa 323
Query: 125 gtccaggtcaaggcagggcagagcagaaccacagtttcgttcctaatgctgtgtacagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtccaggtcaaggcagggcagagcagaaccacagtttcgttcctaatgctgtgtacagac 383
Query: 185 atcccccgcccaccccacccccacccccactagatctccaacagggaaaaataaatgttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcccccgcccaccccacccccacccccactagatctccaacagggaaaaataaatgttt 443
Query: 245 taaatcctgcaacaaaatcaatgtgtttttgcgttgtaggataatatagaaactacagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaatcctgcaacaaaatcaatgtgtttttgcgttgtaggataatatagaaactacagaa 503
Query: 305 agagcaaagcaagaattcctgtgatcaccataaggtccaattgtagcctgaaacccagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagcaaagcaagaattcctgtgatcaccataaggtccaattgtagcctgaaacccagag 563
Query: 365 ccgactttgcacagcgcagctgccttcctgcctaatggcccagaaccatgtccgcgtcac 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccgactttgcacagcgcagctgtcttcctgcctaatggcccagaaccatgtccgcgtcac 623
Query: 425 gtggtttaaatcttcagctacaaaatggctttagaagcaagacctcagctcccggagtga 484
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 624 gtggtttaaatcttcagctacaaaatggctttagaagcaagacctcagatcctggagtga 683
Query: 485 ctgggtacttgtcctagttgtcacaccaggccactcttggtcaccctgaggactggctct 544
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 ctgggtacttgtccttgttgtcacaccaggccactcttggccaccctgaggactggctct 743
Query: 545 ttaaggtggc 554
||||||||||
Sbjct: 744 ttaaggtggc 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_b04.g1 MSMg01no143_b04.g1 CHROMAT_FILE:
MSMg01no143_b04.g1 PHD_FILE: MSMg01no143_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:31 2005
(383 letters)
>mm_chr13_56726556_56727338
Length = 783
Score = 717 bits (371), Expect = 0.0
Identities = 380/383 (99%)
Strand = Plus / Minus
Query: 1 tggtacatggaggtgagggtcatgccgtgcttgagctcatcggtcaggacccgcctgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tggtacatggaggtgagggtcatgccgtgcttgagctcatcggtcaggacccgcctgtcc 524
Query: 61 accatgtggtagcggagagcattgagcagttcaatgttgacgttgctcaccagggagtcc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 523 accatgtggtagcggagagcattgagcagttcgatgttgacgttgctcaccagggagtcc 464
Query: 121 agcacttcctagaaagaaaggacatgacagttaagaggcagcagccctgtgttcaaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agcacttcctagaaagaaaggacatgacagttaagaggcagcagccctgtgttcaaggga 404
Query: 181 ggggcacctgccccaagtggacctagatgcctcttctaagagggagtcctcctttagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggggcacctgccccaagtggacctagatgcctcttctaagagggagtcctcctttagtgg 344
Query: 241 gcatctgtgggaggttgggggacactgcttccagtgcactggggaggactgctttcactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcatctgtgggaggttgggggacactgcttccagtgcactggggaggactgctttcactt 284
Query: 301 tccttggggctgggagcatattaaaggaaagaatgtcactacccaatcccactgtgtgcc 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 283 tccttggggctgggagcatattaaaggaaagaatgtcactacagaatcccactgtgtgcc 224
Query: 361 cagacctctggggaagggcagtt 383
|||||||||||||||||||||||
Sbjct: 223 cagacctctggggaagggcagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
