Query= MSMg01no143_c11.b1 MSMg01no143_c11.b1 CHROMAT_FILE:
MSMg01no143_c11.b1 PHD_FILE: MSMg01no143_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:37 2005
(619 letters)
>mm_chr13_22141722_22142741
Length = 1020
Score = 1102 bits (570), Expect = 0.0
Identities = 597/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 4 gaattccttcctgatc-ccgtaagaaaaactaaaaattcgaggtgagaacagagagaaga 62
|||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 606 gaattcgttcctgaccaccgtaagaaaaactaaaaaatcgaggtgagaacagagagaaga 547
Query: 63 gaaagaagggcaaggaaaggagacccagatgaagctgaagtccgttctttccctcactct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaaagaagggcaaggaaaggagacccagatgaagctgaagtccgttctttccctcactct 487
Query: 123 attactttagtttcatttttggcattttcattcagtacctcttttagaaatcaacacgac 182
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 486 attactttagtttcatttttggcattttcattaagtccctcttttagaaatcaacatgac 427
Query: 183 tacgagcactgaaaaatgaaagatcagagcgcgtacacacacgagaagcatcataccaga 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 426 tacgagcactgaaaaatgaaagatcagagcgcgtacacacacgagaaccatcataccaga 367
Query: 243 ctggaatcattactgcttagatactttgtacataatgaaacataggctgtattttcacat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctggaatcattactgcttagatactttgtacataatgaaacataggctgtattttcacat 307
Query: 303 gtattttggaggatctactaagagtggctagcatcttgcaaattccattttctaatcatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtattttggaggatctactaagagtggctagcatcttgcaaattccattttctaatcatg 247
Query: 363 ctttcatttactatcaatttaccagtctttaggattactagctccccttcctccaagctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctttcatttactatcaatttaccagtctttaggattactagctccccttcctccaagctg 187
Query: 423 aggaaacatcttgttagaacaatgaaaaagaatgtaagaagagatgctaaggtgggggga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aggaaacatcttgttagaacaatgaaaaagaatgtaagaagagatgctaaggtgggggga 127
Query: 483 ggggctgctgtgaaacattgcctaatggccacagcgtggatgctctgcagctgtggttac 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ggggctgctgtgaaacactgcctaatggccacagcgtggatgctctgcagctgtggttac 67
Query: 543 ccgcgcaagatcaaagcgcttaaaaataccagcgcagagggggaaagaggctacagaggc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ccgcgcaagatcaaagcgcttaaaaataccagcgcagagggggaaagaggctacagaggc 7
Query: 603 tgcagc 608
||||||
Sbjct: 6 tgcagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_c11.g1 MSMg01no143_c11.g1 CHROMAT_FILE:
MSMg01no143_c11.g1 PHD_FILE: MSMg01no143_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:38 2005
(570 letters)
>mm_chr13_22027407_22028376
Length = 970
Score = 1056 bits (546), Expect = 0.0
Identities = 566/576 (98%), Gaps = 7/576 (1%)
Strand = Plus / Plus
Query: 1 acaaatttacttttttttccctcctgtaattccagatattacaattatgctgaatcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaatttacttttttttccctcctgtaattccagatattacaattatgctgaatcagta 260
Query: 61 aaaatgtaacttttattgttacatgatagagatgaaggagcacaaatcattttcaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgtaacttttattgttacatgatagagatgaaggagcacaaatcattttcaactgt 320
Query: 121 tgcctaaactacaagattagattcacacaattattttacgataaaaagtgatttgattat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctaaactacaagattagattcacacaattattttacgataaaaagtgatttgattat 380
Query: 181 aacacctcacccccacccccacccccaacctcctcacactcaagactcaatgacctccac 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaccccacccccacccccacccccaacctcctcacactcaagactcaatgacctccac 440
Query: 241 accaccggaacgcccaaagcagtaaaacaagcctggtatgatgacctcatctgtaacgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaccggaacgcccaaagcagtaaaacaagcctggtatgatgacctcatctgtaacgcc 500
Query: 301 agcactcctgagcctaaatccggaggagtatatcgagatcaaccaccagcttggactgca 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 agcactcctgagcctaaatccggaggagtatatcgagatcaag-accagcttggactgca 559
Query: 361 caacaagcttttgtctccaaaaactgtaataggggctggagagtggttaagagatcacag 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caacaagcttttgtctccaaagactgtaataggggctggagagtggttaagagatcacag 619
Query: 421 cagtcttttttttttttttttt------tttctgccccccttaggtgctagagttacgct 474
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 cagtctttttttttttttttttcttttttttctgccccccttaggtgctagagttacgct 679
Query: 475 tgaatatctgcttttaaagatcttcctttttatttttaattatttttatgcatgtatgta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaatatctgcttttaaagatcttcctttttatttttaattatttttatgcatgtatgta 739
Query: 535 tctcggaggagttatgacatcagcgcagttgcccac 570
||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctcggaggagttatgacatcagcgcagttgcccac 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
