Query= MSMg01no143_p03.b1 MSMg01no143_p03.b1 CHROMAT_FILE:
MSMg01no143_p03.b1 PHD_FILE: MSMg01no143_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:38 2005
(638 letters)
>mm_chr13_28894289_28895326
Length = 1038
Score = 673 bits (348), Expect = 0.0
Identities = 405/436 (92%), Gaps = 20/436 (4%)
Strand = Plus / Plus
Query: 5 gaattccaaatgatgccgagagtttattaacaagataatttttgtaagtcactgctgaac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatgatggcgagagtttattaacaagataatttttgtaagtcactgctgaac 264
Query: 65 agattctagaagagttttatggtttgtcaatatcaaatggtggcgagtaatctaagaatt 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggttctagaagagttttatggtttgtcaatatcaaatggtggcgagtaatctaagaatt 324
Query: 125 tagtgagccaataaaacaaaaggcagtcacaatacacccacagtcacagagagctccctg 184
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tagtgagccaataaaacgaaaggcagtcacaatacacccacagtcacggagagctccctg 384
Query: 185 gggggacgagggttcctttccatactaccaactaaggcaaaagctccagcaatgactttt 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggggacgagggttcctttccacactaccaactaaggcaaaagctccagcaatgactttt 444
Query: 245 ccatttgtacctcggttcccgatccctctttactgccatgccatcgtcacctgtgttcag 304
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 ccatttgtacctcggttccccatccctctttactgccatgccatcatcacctgtgttcag 504
Query: 305 gcatgcatctgagcactat---------gagat-----------tgtcctcacacctgga 344
||||||||||||||||||| ||||| ||| ||||| |||||
Sbjct: 505 gcatgcatctgagcactatatgcttgaagagatggaatatagattgttttcacaactgga 564
Query: 345 aaatgtctacacatcatgtacacacacgtgcatatcagatgattggaataaagctcgagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgtctacacatcatgtacacacacgtgcatatcagatgattggaataaagctcgagt 624
Query: 405 caccaggaattagtat 420
|||||||| |||||||
Sbjct: 625 caccaggacttagtat 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_p03.g1 MSMg01no143_p03.g1 CHROMAT_FILE:
MSMg01no143_p03.g1 PHD_FILE: MSMg01no143_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:38 2005
(611 letters)
>mm_chr13_29046163_29047173
Length = 1011
Score = 1135 bits (587), Expect = 0.0
Identities = 605/611 (99%)
Strand = Plus / Minus
Query: 1 ttaagcatcagcggatgatcttgaactcctgatcttcctgaaggcacctcccaagtactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 ttaagcatcagcggatgatcttgaactcctgatcttcctgaaggcacctcccaagtactg 834
Query: 61 agataacaaacggggaccaccaaaggggctttcgattacgtttcaccaccggtgaccacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 agataacaaacggggaccaccaaaggggctttcgattacgtttcaccaccggtgaccacc 774
Query: 121 tcccaccttaatctctcgaacatcgtgctgctcttactagaagtgtcatttgcattaggg 180
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 773 tcccaccttagtctctcgaacatcgtgctgctcttactagaagtggcatttgcattaggg 714
Query: 181 agaactcggaatgcgtgttagaatccagagggctcaggacacacatccgtggtttataat 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agaactcggaatgtgtgttagaatccagagggctcaggacacacatccgtggtttataat 654
Query: 241 cacacactcaccgggcactaacacaagccctctataaagctcacaaggttcccaaagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cacacactcaccgggcactaacacaagccctctataaagctcacaaggttcccaaagcac 594
Query: 301 agaagaggaggacaatgagacccagaaagaaagatcaggacagggacttgagataggtcc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 593 agaagaggaggacaatgagacccagaaagaaagatcaggagagggacttgagataggtcc 534
Query: 361 agcagcccactcccctgtgccacccctttctcttcttggtcttttaggcccaattgcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agcagcccactcccctgtgccacccctttctcttcttggtcttttaggcccaattgcttc 474
Query: 421 aagtagcacagacacacgggagacaatgggtaagaaacagagggggaaggagagcacata 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 473 aagtagcacagacacacgggagacaatgggtaagaaagagagggggaaggagagcacata 414
Query: 481 gcgaacccatctatcctttggatattgtggaaaacaaacatttagaaagtgaagtcaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcgaacccatctatcctttggatattgtggaaaacaaacatttagaaagtgaagtcaatc 354
Query: 541 ccatcctgtattcaccatgatcgccctatacagaaatcacaccaagtctcttattgaggt 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 353 ccatcctgtattcaccatgatcgccctatacagaaatcacacaaagtctcttattgaggt 294
Query: 601 aattatgggcc 611
|||||||||||
Sbjct: 293 aattatgggcc 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
