BAC Information

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BAC

Clone NameMSMg01-144A10
Chromosome13 (Build37)
Map Location 35,434,407 - 35,434,511
singlet/doubletsinglet
Overlap genenone
Upstream gene3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A10.T7 (MSMg01no144_a10.b1)MSMg01-144A10.TJ (MSMg01no144_a10.g1)
ACCAG348207AG348208
length842841
length of high quality
(start - end)
109 (46 - 154)168 (74 - 241)
definitionCHROMAT_FILE: MSMg01no144_a10.b1 PHD_FILE: MSMg01no144_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:44 2005CHROMAT_FILE: MSMg01no144_a10.g1 PHD_FILE: MSMg01no144_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTGCTAGCCTTAACAACCAATTATGTCACACTATCAACCTTC
AAGAAAACCACTTTAATACAGGGTTAAACACAAAGTGCTAGGTTCTAACC
CAGGGATGGAGGATAGTGAGATCTTGTGGCACATTGCCCATCTCAGTGAT
TTTAACTTCTGCCACTGTTTAGGATTATTGGTGCTGCGTGCCAGGGCAGC
CTGTTGTTCTCTGCCAGAGAGTATTCAAATTTTCTCTCTCTCTCTCTCTC
TCTCTCTTTCCTTTTTCTTTTTTTCTCTCCCTTCCCTTCTTTCTTCCCCT
GTACCTCCTTCTCTCTCCCCCTTATTTCTTTCTACTCCCACTCCTCCTTT
TTCCCCTTTTTCTTATATTTTTCCCCCCCCCCCAGCCTTATTTATTTTCC
CTTCCCTTCCCTCTTTTTCTCCCTACCCTCTCCTTTCTTTTCTTTCTTTC
CCTCCATACCCCTCTTTCATCCTCCCTATATCCCCCCGTCTCTCTTTTTC
TTCCCCCCCCCATAATCAATGTTCTTTAACGCCTCCCCCCTTTTTCTCCT
CCTTCCTCCTCTCTTTCTTATCCCTTTCTCCCCCCCTTATTTCCTTTTTC
TCATTCCCCCTTTATCTTTTGTCTTCTTCTCCTCTTCCCTTCTTTATATC
CTCTCCCCCCTTTTTCCGTTTCCCCATCCTTATCCCCCCTTTTATTTATT
CTTCCTCCCCTCTCTTTTTTTCCCCTTTTTTTCTCTCTTTTCTCTCCCCT
CCATTCTCCTCTCTTCCCCCTCCCATTTTTCTTTTTTTCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTATTTGGGAAGTAGAGGTAGGGAG
ACCAGGAGTTCAAAACCTTCCAAAGCCACACAAATAATTCAAGGCCAGCC
TGGTTTCTCCTTTTAGAAAGCACATCTCAACTTCCACTACCACCTACAGA
AGGACGAGAAGGAAGAAGAAGAGGAGAAGGAGGGGGGAGATGAGTTTTTT
CCCCCCTTTCTTCCCTTTCTTCCCTTCCGTCTCTTTTCCCCCCCTCCCCA
TTTACTCCCCCCCCCCCCCTATCCTCTTTTCTCCCTTCCCCTCCTCCTCC
CCCCTTTGTTTTCTCTTTTTTCTTGTCCCTCTCTTTTTCCTTTCTTCTCT
TTCCCTTTCTTTTCCTCCCCTTTTTTTTTCTCCCCCCCCCCCCGGTTCCT
CTTTTTCCCCCTTTTCCCCCTTTTTTTTCTCCCCCCCCCGCCAATTTATT
CTTTCACCCCCCTTCTTTTCCCATTCTTTCCCCCACTTTTTTTTTTTCCC
CACATTTTCCCCCTTTTCTTTCCCTTCTTTCCTTCTTTCTTTCTTTCCCT
TTTTTTCCCTTTCTCTTCACTTTCTTTTCCTATCTTTTTACTTCCCTCTT
TCCCCCCCCTTTTTTCCTTTTTTTATTACTTTTTTTCCTCTCTTCTCACC
CCATTTCCCCTTTTCCTTATCCCCCTCTTCTTCGCTCTTCTTTCCCCCTT
CTTTTCCTCTCCTTCTTTTTTTTCTCCCCTTATTTCTCTTTCTCTCCCCC
ATTCTTTTTTCTTTTCTTTTATATCCCTCCCTCTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a10.b1 MSMg01no144_a10.b1 CHROMAT_FILE:
MSMg01no144_a10.b1 PHD_FILE: MSMg01no144_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:44 2005
         (109 letters)



>mm_chr13_35434203_35434711
          Length = 509

 Score =  165 bits (85), Expect = 1e-45
 Identities = 100/105 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctttgctagccttaacaaccaattatgtcacactatcaaccttcaagaaaacc 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaattctctttgctagtgttaacaaccaattatgtcacactatcaaccttcaagaaaacc 250

                                                        
Query: 65  actttaatacagggttaaacacaaagtgctaggttctaacccagg 109
           ||||||||||||||||||||||||||||| |||  ||||||||||
Sbjct: 249 actttaatacagggttaaacacaaagtgcaaggggctaacccagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)