Query= MSMg01no144_b02.b1 MSMg01no144_b02.b1 CHROMAT_FILE:
MSMg01no144_b02.b1 PHD_FILE: MSMg01no144_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:47 2005
(639 letters)
>mm_chr13_85336783_85337821
Length = 1039
Score = 1123 bits (581), Expect = 0.0
Identities = 620/633 (97%), Gaps = 2/633 (0%)
Strand = Plus / Plus
Query: 8 gaattcaatgtgtctag-ccctcagtttgttggaaatcttcgagagagtcctcttggaca 66
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcaatgtgtctagtccc-cagtttgttggaaatcttcgagagagtcctcttggaca 266
Query: 67 ggagagggcactggaacagattttggaatatgaactactacttatacaacaacttaattt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggagagggcactggaacagattttggaatatgaactactacttatacaacaacttaattt 326
Query: 127 tcaccttattgtccacaatccatacagaccatttgaaggcttcctcatcgatataaaggt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcaccttattgtccacaatccatacagaccatttgaaggcttcctcatcgatataaaggt 386
Query: 187 aaacctgctgataggaaattagctagtagagctaattctttgttattgtttgctaaaacg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaacctgctgataggaaattagctagtagagctaattctttgttattgtttgctaaaacg 446
Query: 247 aattgaaaactttataatcagtaatagactaactcgtacaacacaagtgcaacctgagag 306
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 447 aattgaaaacttcataatcagtaatagactaactcgtacaacacaggtgcaacctgagag 506
Query: 307 tctagggtaatagttttcaaacttcaatgtgcattagagtacacctggagagtttgtttc 366
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 507 tctagggtaatagttttcaaacctcagtgtgcattagagtacacctggagagtttgtttc 566
Query: 367 ttaagattattggataagagttcccaggtttctggtttagttactttctataatagatta 426
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 567 ttaagattattggataagagttccctggtttctggtttagtaactttctataatagatta 626
Query: 427 tgagattatagtaatgtcattaaagaattattgtaactcttgtaaccgatatatattgtc 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 627 tgagattatagtaatgtcattaaagaattattgtaactcttgtaaccgatatatatggtc 686
Query: 487 atagatctaggcctagtgacttatagaacctcaaaaatttcttaatattaaactaaagta 546
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 687 atagatctaggcctagtgacttatagaacctcaaaaaagtcttaatattaaactaaaata 746
Query: 547 taaattgatcttattttaaatgttttatgtactcagttcacaaataaaagcaccaaaatt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 taaattgatcttattttaaatgttttatgtactcagttcacaaataaaagcaccaaaatt 806
Query: 607 ataagtacataggtgagacctgtattttcagag 639
|||||||||||| ||||||||||||||||||||
Sbjct: 807 ataagtacatagatgagacctgtattttcagag 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_b02.g1 MSMg01no144_b02.g1 CHROMAT_FILE:
MSMg01no144_b02.g1 PHD_FILE: MSMg01no144_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:47 2005
(597 letters)
>mm_chr13_85361872_85362868
Length = 997
Score = 1131 bits (585), Expect = 0.0
Identities = 594/597 (99%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 1 tacttttcttacaggcagaatgtctaaatagtgccctgagggcacagctcagtggtgggg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 709 tacttttcttacaggcagaatgtct-aatagtgccctgagggcacagctcagtggtgggg 651
Query: 61 tattagcttaacactaagaggtcctggatttgattcctaccgctgaataaaacagccaac 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tactagcttaacactaagaggtcctggatttgattcctaccgctgaataaaacagccaac 591
Query: 121 caaaactcaagtagctgtgccaagacatactgaagaattgtaggaatgaagaaaatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 caaaactcaagtagctgtgccaagacatactgaagaattgtaggaatgaagaaaatgaaa 531
Query: 181 agcacagtatttcagcagctgtgtgtgatgtacaataaactgttctgtactttaaatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agcacagtatttcagcagctgtgtgtgatgtacaataaactgttctgtactttaaatgtg 471
Query: 241 cttaaatatgtgtaactgttaaactaatacagcagggagtcctctggttggattaataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cttaaatatgtgtaactgttaaactaatacagcagggagtcctctggttggattaataat 411
Query: 301 gacagtgtactttagaggcttttgtgcctgaggtgatttctcttcctagtcatctttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gacagtgtactttagaggcttttgtgcctgaggtgatttctcttcctagtcatctttaaa 351
Query: 361 ttgtgtagtacccatgtattattcaatttaaaatcaccttaaaaatttaaaaatattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgtgtagtacccatgtattattcaatttaaaatcaccttaaaaatttaaaaatattttt 291
Query: 421 ttcactgagatttaggtttttagttcccagaccctactaaagtatcaaaatgcttcagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ttcactgagatttaggtttttagttcccagaccctactaaagtatcaaaatgcttcagaa 231
Query: 481 aaccttatgaaggaaccttcactatgggggaaaaatcataatgtgaagagttattaattg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aaccttatgaaggaaccttcactatgggggaaaaatcataatgtgaagagttattaatta 171
Query: 541 ttgtaagtaatctgtagaaggaacttcaaaactatggggaaccatgtattctttaag 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttgtaagtaatctgtagaaggaacttcaaaactatggggaaccatgtattctttaag 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
