Query= MSMg01no145_h11.b1 MSMg01no145_h11.b1 CHROMAT_FILE:
MSMg01no145_h11.b1 PHD_FILE: MSMg01no145_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:33 2005
(440 letters)
>mm_chr13_44618141_44618980
Length = 840
Score = 810 bits (419), Expect = 0.0
Identities = 437/447 (97%), Gaps = 7/447 (1%)
Strand = Plus / Minus
Query: 1 ggtagataagaaagacgcattagccaggtgagaagaccccagaagacatcttctgtggat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggtagataagaaaaacgcattagccaggtgagaagaccccagaagacatcttctgtggat 697
Query: 61 gctgagtctttaaatgtcaccagactaacccatattgactgtgatcag-------gaaaa 113
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 696 gctgagtctttaaatgtcaccagactaacccatattgactgtgatcagaaaaaaaaaaaa 637
Query: 114 aaaaaaaaacctcacttagatagggttccagaaggcacaatcaggtagaaactgaccagg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaaaaaaaacctcacttagatagggttccagaaggcacaatcaggtagaaactgaccagg 577
Query: 174 acctgaacatctaagacatcactgtgatggtttgagtagcatcagggtaggctcacgtca 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acctgaacatctaagacatcactgtgatggtttgagtagcatcagggtaggctcacgtca 517
Query: 234 caatggaccaggaccagtggaaatagtgtggtggggatttagagttcaaatcttaagact 293
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 516 caatggaccaggaccagtggaaatagtgtggtggggatttggagttcaaatcttaagact 457
Query: 294 caccgagtcagcatgtctttttggaggccttgtaattaaggcagcttctgctagcatcca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caccgagtcagcatgtctttttggaggccttgtaattaaggcagcttctgctagcatcca 397
Query: 354 cgggaatagtaaagccatggaatggaaagaaatactgtggcatagcacagccaccgtgat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cgggaatagtaaagccatggaatggaaagaaatactgtggcatagcacagccaccgtgat 337
Query: 414 gttgaatatcaggtgggagctccaggg 440
|||||||||||||||||||||||||||
Sbjct: 336 gttgaatatcaggtgggagctccaggg 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_h11.g1 MSMg01no145_h11.g1 CHROMAT_FILE:
MSMg01no145_h11.g1 PHD_FILE: MSMg01no145_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:33 2005
(456 letters)
>mm_chr13_44528998_44529854
Length = 857
Score = 845 bits (437), Expect = 0.0
Identities = 452/457 (98%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 catagttcatcaaattcattgtcaaacagatgaaataaagagaagagaccttacatgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagttcatcaaattcattgtcaaacagatgaaataaagagaagagaccttacatgtct 260
Query: 61 cagctctgggcatgttatcatcttcaataaatggagagtcccattctcagttttcaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctctgggcatgttatcatcttcaataaatggagagtcccattctcagttttcaagaa 320
Query: 121 aagtcatgtgttcactcatccatctgcttctatctccagttattcaacccaagtatatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtcatgtgttcactcatccatctgcttctatctccagttattcaacccaagtatatgt 380
Query: 181 ctaatgtgttggatgtatatccttttatttagacggttgttattacatatggtatatcag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatgtgttgggtgtatatccttttatttagacggttgttattacatatggtatatcag 440
Query: 241 ttctgtataagttttttt-caattaagtttaaagcatgcacccaggaagataaaataacc 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgtataagttttttttcaattaagtttaaagcatgcacccaggaagataaaataacc 500
Query: 300 ttttaattacaaagctctctgaatttacatgtctgcattcaactggccaaccaaatcgaa 359
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 501 ttttaattacaaagctctctgaatttacatgtctgcattcacctgggtaaccaaatcgaa 560
Query: 360 acagagagtttctctatagctcttagcacaactttgcgtcacagaagtgtctctacccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagagagtttctctatagctcttagcacaactttgcgtcacagaagtgtctctacccaa 620
Query: 420 gagagatggctgtgttttgcctcattttacagcagta 456
|||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagatggctgtgttttgcctcattttacagcagta 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
