BAC Information

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BAC

Clone NameMSMg01-145J16
Chromosome13 (Build37)
Map Location 24,522,686 - 24,523,251
singlet/doubletsinglet
Overlap geneCmah
Upstream geneBtn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145J16.T7 (MSMg01no145_j16.b1)MSMg01-145J16.TJ (MSMg01no145_j16.g1)
ACCAG349364AG349365
length694688
length of high quality
(start - end)		372 (47 - 418)553 (72 - 624)
definitionCHROMAT_FILE: MSMg01no145_j16.b1 PHD_FILE: MSMg01no145_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:44 2005CHROMAT_FILE: MSMg01no145_j16.g1 PHD_FILE: MSMg01no145_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCATAATTTGCGGCGCTATACGACTCCTATTTCAAGAGGAGCCGCG
GAATTCTCACCTGTGCCATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTTCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTCCCAACTGATAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATCCCCCACCAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACCTCTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAAC
CTAGTATACCCAAGATATAAGATACAATTTGCTAAACACATGAN

NNCCCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGCCTGCTGGTTATACTGCCGCTTCCAA
TACTGGGATTATAGACATGTGCCACTACGCTCTGTTTATAAAACATTTTT
GGGTGCTTCTGCAGTCTGACTTGCACCATAGGACTATGAAAAAGAAGAGA
AATAAAAGTAAAATTTTGCATATGTACCACAATTCTAATTTTAAAAGTGC
TCCCACAGTGTATATCCACAAGAGTGAGGAGGGAGCCATTATGGAAAGCA
GGGTGCTTGTAACTTCTCATAGACTTCTGCTCTCTGTTCATGAACAGGCA
CAGGCATAAAGCCCATCAGAGTGGCCTTGTTTTTGTTCAAAATTTATAGC
ACAAACCAACACACACCCGTAAAAGGCCAGTGATCGCAGCATTTGAAAAG
CTGAGGCAGGAGGATCAAGAATTCGATGCCAGTATGTGCTACATAACAAC
ACTGTTTCAAAAATGACAGACAGGTACTTTTAAAATAAAGGACCAATGGA
ATATTATGGGTTTTACACACACGTTGAACCCCAATTATAACTGTCCTTTG
AACACAGGAGTGCCACAGGGAGTCACAAATGAAAGTAGGAACTAATATCC
CAATAAAACTTTAGTGATGGATATAATTCCCATGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_j16.g1 MSMg01no145_j16.g1 CHROMAT_FILE:
MSMg01no145_j16.g1 PHD_FILE: MSMg01no145_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:44 2005
         (553 letters)



>mm_chr13_24522499_24523451
          Length = 953

 Score =  932 bits (482), Expect = 0.0
 Identities = 540/566 (95%), Gaps = 13/566 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcctgctggttatactgccgcttccaa-tactgggattatagacatgtgccactacgc 59
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 188 ctgcctgctggttatactgccacttccaaatactgggattatagacatgtgccactacgc 247

                                                                       
Query: 60  tctgtttataaaacatttttgggtgcttctgcagtctgacttgcaccataggactatgaa 119
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 248 tctgtttataaaacatttttgggtgcttctgcactctgacttgtaccataggactatgaa 307

                                                                       
Query: 120 aaagaagagaaataaaagtaaaattttgcatatgtaccacaattctaattttaaaagtgc 179
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 308 aaagaagagaaataaaagtaaaattttgtatatggaccacaattctaattttaaaagtgc 367

                                                                       
Query: 180 tcccacagtgtatatccacaagagtgaggagggagccattatggaaagcagggtgcttgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcccacagtgtatatccacaagagtgaggagggagccattatggaaagcagggtgcttgt 427

                                                                       
Query: 240 aacttctcatagacttctgctctctgttcatgaacaggcacaggcataaagcccatcaga 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 428 aacttctcagagacttctgctctctgttcatgaacaggcacaggcataaagcctatcaga 487

                                                                       
Query: 300 gtggccttgtttttgttcaaaatttatagcacaaaccaacacacac-c-----------c 347
           |||||||||||||||||||||||||||||||||||||||||||||| |           |
Sbjct: 488 gtggccttgtttttgttcaaaatttatagcacaaaccaacacacacacacacacacacac 547

                                                                       
Query: 348 gtaaaaggccagtgatcgcagcatttgaaaagctgaggcaggaggatcaagaattcgatg 407
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtaaaaggccagtgatagcagcatttgaaaagctgaggcaggaggatcaagaattcgatg 607

                                                                       
Query: 408 ccagtatgtgctacataacaacactgtttcaaaaatgacagacaggtacttttaaaataa 467
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccagtgtgtgctacataacaacactgtttcaaaaatgacagacaggtacttttaaaataa 667

                                                                       
Query: 468 aggaccaatggaatattatgggttttacacacacgttgaaccccaattataactgtcctt 527
           |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 668 aggaccaacggaatattatgggttttacacacacgttgaaccccaattaccactgtcctt 727

                                     
Query: 528 tgaacacaggagtgccacagggagtc 553
           ||||||||||||||||||||| ||||
Sbjct: 728 tgaacacaggagtgccacaggtagtc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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