BAC Information

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BAC

Clone NameMSMg01-146F04
Chromosome13 (Build37)
Map Location 27,803,078 - 27,803,797
singlet/doubletsinglet
Overlap genePrl7d1
Upstream geneHdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001
Downstream genePrl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146F04.T7 (MSMg01no146_f04.b1)MSMg01-146F04.TJ (MSMg01no146_f04.g1)
ACCAG349890AG349891
length1,2121,172
length of high quality
(start - end)		713 (128 - 840)720 (127 - 846)
definitionCHROMAT_FILE: MSMg01no146_f04.b1 PHD_FILE: MSMg01no146_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:58 2005CHROMAT_FILE: MSMg01no146_f04.g1 PHD_FILE: MSMg01no146_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTCTTTNNNNNTACAATGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCTTTCTTTAGTTGGCTCTTATAAATACCATATGTGAGGACA
TTTAGGAGTCAATATCTTTGATCAGAAACAAAAACACCACCATAATATTT
AATACTTAAAAGTCAAGAGAAATGGTGAACTGGTTGTTAATACAACCAGT
TCTGTCAACACAGGGTCAATACTAACACATGATAAATACAACTGTATAGT
CATTGTCTAAGCCTGCATCAATAGAGTTTTAGCCTTGAATTTCAATGGCA
GTTTAAAAATCCCCTACAGAATAGTATGAATAATACAATTGGTGGGTAGT
GGAAAAAGTTTCTATCACTGTGGACAATTTATAGATACAAGAAAATGTTA
CTTGTTTCATTTCACTTACAAGTCATCAACTGTGCATTATAGTTTTCCTC
TTGTTATACATTCTGTCTCTTTTTCCCCACATAAATAATTATCATTTTCC
TTTTATTATATATTCTATCTCTATAAATGATTATTACACCTGTAATAACG
TTCCCATATAAATGTACAATACCATTAATAACTTACAATATTGAAAATCA
AGTGTACTCTTTCAAAGTTTTGCTGAAACTACATTGTGTGCAAACTCACG
TGTGTGTGCCTGGCTTGTTCCTTGTTTTCTGGAGTTGGAAGGAAAGAAGT
ATGGCATCTCGTGGGGCTTTTGTCTCTGAGCCCAGGCACTTTAGAATAAT
GTTTTTCCTGGAATTAATGAGATATTTAGTTGAGACCAGAAATTATGGAA
GGGTTAAATGAACAGAAAGTAATGAATTTAAAGTGAGTACTAAAAACTGA
AATTAAAATATTACATAAATGACCATGAAAATTATTTTAATTAAAATTCA
ATTGCATATTTTCTCCTTCCTTTTCTTTTCTTTTCTTTGACCCTTCCCCA
CATACCCTAACTATTATCATCAAACTTTCTTTTCACCCAGTCTGACTCCC
TCCTTAATTTTTGGCATCCTTTAAAATTTTTTTTCCCAAAAAAGAGTTTT
CTTTGGGTAATCCCTGAAAATGCCCCGACAAAAAATTTTTTAAACCCAAT
TTGGGCCTTAAATCTATAAAAATTGTCCGGCCTCCCGCAATCCCATGTTT
TTTGTAAAAAAAAGGGTGTGGGCCTGATCCTTCCTCATATTCTTTTTGGG
TGTTTCTTCTTG

CCATATTTTTTNTNATAGATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAATATTACTAGGCCAGTT
GATGACACGAGGTCCACACTATATTTCAATCTATCCACCCCCTTGTCTGC
ATTTGGGCAGGATTAATTGAAGCACTGTCAATTGAAGCACTGTGACATTT
CTACAATAGAGTAAGTCTCCAGAAACATTAGGTCTCCGTCTTCCTCTCCT
TTCACTTCATTATTTTAAAATGATAGCTAAGTAATCTAGTTGAGTGTAAT
CTATGGACATAGGTAAGAAAGGAGAGATCATAACAAGACTTAGGTAGAGT
TGCAGTGATGTATATAGCATTTCACAACAACTGAAGAAGTCATTTTCTTG
GGAGAAACAGTAGATAGTATTTATAAGACTCCTTTGTCCAGGCACTTTCA
GGTAATATACAGAAGGAATTCTAACATTAATGGAATTTGGGAGACATGGG
TAAGAAGCAAATGAAAAACTAGGGGATCCCTGGGATCCAAGAAAAGTTAC
CTTGGTGGCCACTAATGTCAATATGCCAATGTGGAGACGTTATTAATCTA
TTTCAAAGAAAACTGGGTTTATCTCTCTTAGGCCTATAAGTGAATAGGTT
TTTAAAATAGATGTGGACTTCAGCTCAAAGTTTCCTACAACATAATAAGC
CATTGCTCAGTGTGAAGACATTGGTAAAATATGCTCCCTTAAATGTTTAG
CTTATATAGATCTGCTACAAGATTATTTAGTATTTGATTTCCTTTATAAT
TTCTCAAGTGTATACCATGATTTTTATTTCACTGTGCACTCTTACTCATT
GATCCTACTCTTCTGATTACTATACCCCTCTCAGTGCTCATAAGAACTTG
CCAGCTTATCAAAGCCAGGGGACTGCTTTAGCCTTTTAAGAATAATGCAA
AGGTCTCACCGATGTCTTTCCGACATCCTCAATTGTTTCCAGAACGTTGA
ATGGAACAGTGGGGTACTTTGTTGAAGCCTTGGTAAAATTCTCCGAACCC
TTGGGGCAACCAAATACCAAAAAATGTTCTAAAAAAAATTTGAATTTAAT
TTACCCTTCGAATTGGTTTTATTAAAAAATCCCGGGTCCCTAATCATCAC
TCCCTGTTTATAAACACCGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_f04.g1 MSMg01no146_f04.g1 CHROMAT_FILE:
MSMg01no146_f04.g1 PHD_FILE: MSMg01no146_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:58 2005
         (720 letters)



>mm_chr13_27802878_27803997
          Length = 1120

 Score = 1340 bits (693), Expect = 0.0
 Identities = 714/721 (99%), Gaps = 2/721 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatctatccacccccttgtctgcatttgggcaggattaattgaagcactgtcaattgaa 60
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatctatccatgtccttgtctgcatttgggcaggattaattgaagcactgtcaattgaa 260

                                                                       
Query: 61  gcactgtgacatttctacaatagagtaagtctccagaaacattaggtctccgtcttcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcactgtgacatttctacaatagagtaagtctccagaaacattaggtctccgtcttcctc 320

                                                                       
Query: 121 tcctttcacttcattattttaaaatgatagctaagtaatctagttgagtgtaatctatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttcacttcattattttaaaatgatagctaagtaatctagttgagtgtaatctatgg 380

                                                                       
Query: 181 acataggtaagaaaggagagatcataacaagacttaggtagagttgcagtgatgtatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataggtaagaaaggagagatcataacaagacttaggtagagttgcagtgatgtatata 440

                                                                       
Query: 241 gcatttcacaacaactgaagaagtcattttcttgggagaaacagtagatagtatttataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatttcacaacaactgaagaagtcattttcttgggagaaacagtagatagtatttataa 500

                                                                       
Query: 301 gactcctttgtccaggcactttcaggtaatatacagaaggaattctaacattaatggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactcctttgtccaggcactttcaggtaatatacagaaggaattctaacattaatggaat 560

                                                                       
Query: 361 ttgggagacatgggtaagaagcaaatgaaaaactaggggatccctgggatccaagaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggagacatgggtaagaagcaaatgaaaaactaggggatccctgggatccaagaaaag 620

                                                                       
Query: 421 ttaccttggtggccactaatgtcaatatgccaatgtggagacgttattaatctatttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaccttggtggccactaatgtcaatatgccaatgtggagacgttattaatctatttcaa 680

                                                                       
Query: 481 agaaaactgggtttatctctcttaggcctata-agtgaataggtttttaaaatagatgtg 539
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 681 agaaaactgggtttatctctcttaggcctataca-tgaataggtttttaaaatagatgtg 739

                                                                       
Query: 540 gacttcagctcaaagtttcctacaacataataagccattgctcagtgtgaagacattggt 599
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 740 gacttcagctcaaagtttcctacaacataataagccaatgctcagtgtgaagacattggt 799

                                                                       
Query: 600 aaaatatgctcccttaaatgtttagcttatatagatctgctacaagattatttagtattt 659
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 800 aaaatatgctcccttaaatgtttagcttgtatagatctgctacaagattatttagtattt 859

                                                                       
Query: 660 gatttcctttataatttctcaagtgtataccatgatttttatttcactgtgcactcttac 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gatttcctttataatttctcaagtgtataccatgatttttatttcactgtgcactcttac 919

            
Query: 720 t 720
           |
Sbjct: 920 t 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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