BAC Information

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BAC

Clone NameMSMg01-146K13
Chromosome13 (Build37)
Map Location 84,731,998 - 84,894,043
singlet/doubletdoublet
Overlap geneLOC382786
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
Downstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146K13.T7 (MSMg01no146_k13.b1)MSMg01-146K13.TJ (MSMg01no146_k13.g1)
ACCAG350136AG350137
length1,2321,247
length of high quality
(start - end)		772 (92 - 863)661 (123 - 783)
definitionCHROMAT_FILE: MSMg01no146_k13.b1 PHD_FILE: MSMg01no146_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:41 2005CHROMAT_FILE: MSMg01no146_k13.g1 PHD_FILE: MSMg01no146_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,731,998 - 84,732,769)(84,893,398 - 84,894,043)
sequence
CCGACTTTTTTTTTNTACATTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCACTTCTCTCCAGTTCTCCTTATAAAGTACACATGAATT
ACAAGAGGCTAAACATATCGCCTATATCACCCTCTCTAACCCCCAGGGAA
TATTGGAGAAAAGAGAGCAGAAAGTGCAGAAGACCTGAAAGATGTGAATG
TATTATACAAGTATATCATCTGGATACGACAGCACCATTGTACCTGTGAA
GTCACTGCAGATGTGTATCCAGCACACAACCTGCACTAGACTGGACCACC
ACAGAATGTAGAAAGGCTTATGAAGAAGTATTGATAGTTAATGGTGCTTG
GATAATGGGTGTCATATTCTTTAGTAGAATAGGCAATGCTAAGTTGGTTT
TGCTTTAGGATATAAATGTTTATGCAACTAAGCCCCAGATAAAACAAGTG
TGTCACAAGCAAAGACATGAATGTAGAAGGGCATTTCTTGGAAGAACATT
TAAAGTGAGGAAAGGGGAAAATCATAGAGGATAATAGGGGTTGAAAGTAA
CTAAAATCCATTGTATTCTTGTATGTAGATATTAAAGAATATAAAATAAA
TATAAAAAATTCTCAGTTAATCTCAATGCACAGGAATTATCTGGCAATTT
ATTTGAGCTGTAAATATAGGATGTAGAAATGCATTTATATAATTACTATA
GGCATGGTGATTGTATAAAGTACATGTTTGCTACATAAACTGCAAAGTTT
TACAATATCTCAACTCAATTATTGTATTTAAGAGCATTAAAAATATACTT
TTCCTTATAAACTTACTATACAACTTTGAAATGTTTAATAAATCTTGTGT
AAACTAGGATAATTAATTCTGTCTTCATGGCGTGCCTAAAGATTTAGTGA
GTTCTGTAGGATGAGAATGTATTCAGTACACACTTGTAAAAATGTAGGTT
CTTCATAATATCTACTGCCAGACAAGGATGGGGGTATATGCCTGTAAGGC
AGAGGCAAGAGAACCGCATAATTGTACAGTTCATCTTTAACAAGGATTGA
TGGATTATAGATTGATAGATAGATTGATTGATTGGTTGATTGTTTGTTTG
CTTTTTTGTTTTCTTTTTTTTGTTTCTCTCCTCCTCCTTTTATTCATTAT
TCCTATTTCTTTTATCTTATTTCTTTCCTTTCTTATTTTTCTATTTCTTT
TCTTCTTCTTTCTTTTTTCTTTTATTTTCTTC

CCATTTTTTTTTNTAACAGGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAATCAAAGACCACAACACC
CAATTTAATCCTTTCCCCTTTAGGCCACACTCTCCCCGAAAATGGTTAAT
AGAAACAACATTGCCCTTTTTGTACAGCTGTAGATGCCCTATTGATCTGT
ATCACATAGCACTTAACACTGGGTGATTTGGCTAGGAAAAGCAATGTTCA
CTGTTCCATGGCAAATCAGACAACAATGCTCAGATTTGCTATAGAAGCAG
GAAAACAGAAGAGGAGATAGGGAAACAAACAACCTCAAAGAATAAACCTC
ATCTGCATGTTTTTCACTCTATAAGAAACCAACGTAGTTGAATGCAACTG
TATTATTTGTCAAACTATTTCTGCCTAAGGCAGATGTGGATCACCGGAAT
GGAAATCTAATAAACCAACAGCTGAAGACCACATTATTCCCCTGCTCCTT
CCTCACTCATTTAGAAAATGATATGTTTTTCTTCACAATGTTTTTCCCCT
CCTCTCTCTTTAGTGGCAGTAATGCTGAATGCTCTTGACATAATTCTTCG
TTCACCACTGACAGTCATGTTTTTGAATACTATCCCAGCAATAAAACACC
TGACCTTCAGTCTTTCAAATGGCCATTGGCTTGGGTTACCCCAATTAGCT
GGACTCATTTGGAAGTATCCAGAAGAGTTGGGCACTTTACTCCTCACTAA
AAGCAGCATTATGTGTGAATACATTGTTTTATTCAGGTCAATCTTATTTT
TTTTAGAAGTTTTCTTTATTTCCCTATGATTGGAGCACAGGAGAAAAAAA
ACCTAAAAGGACCTATAAATACCAATAATTACCTCTTAGCAGTTTTTATA
AGGCTAAATTCCTAGTTCATTTATAGCCAAAGTTGTAATTCAGTGTTTCT
AGATTACCAGGGAATTATATGGAATGCTTTACCCAAAAACCTTTATTTTA
CTTACTTTTAAGAAGCTTCCTTTTCTATTACACCAGAAAATTTTTCTTTT
TCCTTTGCCTAAACATTTATCATTCTCCATTTCCATGTGCAAAAACAAAA
AAATATTCCCTTTAAAAATTAAAATAATCTTCCTTCAATATTAAATATTC
CTCTTTNTCCATTGGGTTCTTTTTAACTGCTTTTAGTTTTCTAAAACAAA
TTTTCTGTTGTATGATTACACAATCCCAATGTAATAACCTCATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_k13.b1 MSMg01no146_k13.b1 CHROMAT_FILE:
MSMg01no146_k13.b1 PHD_FILE: MSMg01no146_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:41 2005
         (772 letters)



>mm_chr13_84731798_84732969
          Length = 1172

 Score = 1423 bits (736), Expect = 0.0
 Identities = 763/772 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgaattacaagaggctaaacatatcgcctatatcaccctctctaacccccagggaat 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||
Sbjct: 201 acatgaattacaagaggctaaacatatcgtctatatcaccctctctaacattcagggaat 260

                                                                       
Query: 61  attggagaaaagagagcagaaagtgcagaagacctgaaagatgtgaatgtattatacaag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 attggagaaaagagagcagaaagtgcagaagacctgaaagatgtgagtgtattatacaag 320

                                                                       
Query: 121 tatatcatctggatacgacagcaccattgtacctgtgaagtcactgcagatgtgtatcca 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatcatctggatatgacagcaccattgtacctgtgaagtcactgcagatgtgtatcca 380

                                                                       
Query: 181 gcacacaacctgcactagactggaccaccacagaatgtagaaaggcttatgaagaagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacacaacctgcactagactggaccaccacagaatgtagaaaggcttatgaagaagtat 440

                                                                       
Query: 241 tgatagttaatggtgcttggataatgggtgtcatattctttagtagaataggcaatgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatagttaatggtgcttggataatgggtgtcatattctttagtagaataggcaatgcta 500

                                                                       
Query: 301 agttggttttgctttaggatataaatgtttatgcaactaagccccagataaaacaagtgt 360
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 agttggttttgctttaggaaataaatgtttatgcaactaagccccagctaaaacaagtgt 560

                                                                       
Query: 361 gtcacaagcaaagacatgaatgtagaagggcatttcttggaagaacatttaaagtgagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacaagcaaagacatgaatgtagaagggcatttcttggaagaacatttaaagtgagga 620

                                                                       
Query: 421 aaggggaaaatcatagaggataataggggttgaaagtaactaaaatccattgtattcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggggaaaatcatagaggataataggggttgaaagtaactaaaatccattgtattcttg 680

                                                                       
Query: 481 tatgtagatattaaagaatataaaataaatataaaaaattctcagttaatctcaatgcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgtagatattaaagaatataaaataaatataaaaaattctcagttaatctcaatgcac 740

                                                                       
Query: 541 aggaattatctggcaatttatttgagctgtaaatataggatgtagaaatgcatttatata 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggaattatctggtaatttatttgagctgtaaatataggatgtagaaatgcatttatata 800

                                                                       
Query: 601 attactataggcatggtgattgtataaagtacatgtttgctacataaactgcaaagtttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attactataggcatggtgattgtataaagtacatgtttgctacataaactgcaaagtttt 860

                                                                       
Query: 661 acaatatctcaactcaattattgtatttaagagcattaaaaatatacttttccttataaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acaatatctcaactcaattattgtatttaagagcattaaaaatatacttttccttataaa 920

                                                               
Query: 721 cttactatacaactttgaaatgtttaataaatcttgtgtaaactaggataat 772
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cttactatacaactttgaaatgtttaataaatcttgtgtaaactaggataat 972


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1172
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1162
Effective search space:   885444
Effective search space used:   885444
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_k13.g1 MSMg01no146_k13.g1 CHROMAT_FILE:
MSMg01no146_k13.g1 PHD_FILE: MSMg01no146_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:41 2005
         (661 letters)



>mm_chr13_84893183_84894243
          Length = 1061

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaaaatggttaatagaaacaacattgccctttttgtacagctgtagatgccctattgatc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaaaatggttaatagaaacaacattgccctttttgtacagctgtagatgccctattgatc 802

                                                                       
Query: 76  tgtatcacatagcacttaacactgggtgatttggctaggaaaagcaatgttcactgttcc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtatcacatagcacttaacactgggtgatttggctaggaaaagcaatgttcactgttcc 742

                                                                       
Query: 136 atggcaaatcagacaacaatgctcagatttgctatagaagcaggaaaacagaagaggaga 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggcaaatcagacaacaatgctcagatttgctatagaagcaggaaaacagaagaggaga 682

                                                                       
Query: 196 tagggaaacaaacaacctcaaagaataaacctcatctgcatgtttttcactctataagaa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagggaaacaaacaacctcaaagaataaacctcatctgcatgtttttcactctataagaa 622

                                                                       
Query: 256 accaacgtagttgaatgcaactgtattatttgtcaaactatttctgcctaaggcagatgt 315
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 621 accaacgtagttgaatgcaactgtattaaaagtcaaactatttctgcctaaggcagatgt 562

                                                                       
Query: 316 ggatcaccggaatggaaatctaataaaccaacagctgaagaccacattattcccctgctc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ggatcaccggaatggaaatctaataaaccaacagctgaagaccacattattcccccgctc 502

                                                                       
Query: 376 cttcctcactcatttagaaaatgatatgtttttcttcacaatgtttttcccctcctctct 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcctcactcatttagaaaatgatatgtttttcttcacaatgtttttcccctcctctct 442

                                                                       
Query: 436 ctttagtggcagtaatgctgaatgctcttgacataattcttcgttcaccactgacagtca 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttagtggcagtaatgctgaatgctcttgacataattcttcgttcaccactgacagtca 382

                                                                       
Query: 496 tgtttttgaatactatcccagcaataaaacacctgaccttcagtctttcaaatggccatt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttttgaatactatcccagcaataaaacacctgaccttcagtctttcaaatggccatt 322

                                                                       
Query: 556 ggcttgggttaccccaattagctggactcatttggaagtatccagaagagttgggcactt 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttgggttaccccaattagctggactcatttggaagtatccagaagagttgggcactt 262

                                                         
Query: 616 tactcctcactaaaagcagcattatgtgtgaatacattgttttatt 661
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcctcactaaaagcagcattatgtgtgaatacattgttttatt 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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