BAC Information

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BAC

Clone NameMSMg01-148B02
Chromosome13 (Build37)
Map Location 120,161,258 - 120,161,538
singlet/doubletsinglet
Overlap geneNnt
Upstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757
Downstream genePaip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B02.T7 (MSMg01no148_b02.b1)MSMg01-148B02.TJ (MSMg01no148_b02.g1)
ACCAG351173AG351174
length715711
length of high quality
(start - end)
658 (47 - 704)278 (75 - 352)
definitionCHROMAT_FILE: MSMg01no148_b02.b1 PHD_FILE: MSMg01no148_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:51 2005CHROMAT_FILE: MSMg01no148_b02.g1 PHD_FILE: MSMg01no148_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACAGCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAAAAAGAGGAACACGCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCTGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTTTCCTGGGCA
TATATCCAGAAGATGTCCCAACCGGTAAGAAAGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTTCCAACTCAATTCTTC
AACGAATTAGAAAGGGCAATCGGCAGAGTCATCTGGAATAACAAAAAACC
GAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCA
CCATGCCGGACCTAAAACTGTACTACAGAGCAATTGTGATCAAAACTGCA
TGGTACTGGTATAGTGACAGACAAGTAGACCAATGGAACAAAATTGAAGA
CCCAGAGATGAATCCACACACCTATGGTCACTTGATCTTTGACAAGGGAG
CTAANACCATCCAGG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTCTGTCAACTGTCTAAATTTAAA
TTATCCTTAGAGAATCATGTTCCACAAGGGAGGCCTTCCCTGAGCCAACA
GACCAAAGTTTTTTTTTTTTTTTTTTTTAAATAATCTCTTTCTCTTTTTT
CCTTTGCAAAGATCATGTACCTGGGCTCAGGCTTGTGCTGTGTTGGGGCC
CTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACTCGGCAATGCCTTGGG
CATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGAAGC
CGGACCCGCAGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGC
ACCATCGGTGAGCGCTTGTGGCCTTCTGCCTTCCTATGCATTCAATGTCC
TTCATGTGTCTGAAGAGAGTTAGGCTCGGAGACTCAGGTCTGAAGAGTTC
TTTAATACTGAGGGCTTAATCTGAGGAATACATCGTTTGGAAGATTCCTC
CTAGGGTAAAACATTACCCAGCTTATTCTAACTCAGATACAACAGATGCT
CAGATAAAACACGGGGAAGTATATCAACTGAGTTAGAGAGTGGGATTAAA
AAATATCTCAAGTGGCATGAAGTTTATTTTCTTTTACTGATTGCATCCAG
CATTATTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b02.g1 MSMg01no148_b02.g1 CHROMAT_FILE:
MSMg01no148_b02.g1 PHD_FILE: MSMg01no148_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:51 2005
         (278 letters)



>mm_chr13_120160954_120161631
          Length = 678

 Score =  513 bits (265), Expect = e-150
 Identities = 276/281 (98%), Gaps = 3/281 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtctgtcaactgtctaaatttaaattatccttagagaatcatgttccacaagggaggc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 585 atgtctgtcaactgtctaaatttaaattgtccttagagaatcatgttccacaagggaggc 526

                                                                       
Query: 61  cttccctgagccaacagaccaaag---ttttttttttttttttttttaaataatctcttt 117
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 525 cttccctgagccaacagaccaaagtttttttttttttttttttttttaaataatctcttt 466

                                                                       
Query: 118 ctcttttttcctttgcaaagatcatgtacctgggctcaggcttgtgctgtgttggggccc 177
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctcttctttcctttgcaaagatcatgtacctgggctcaggcttgtgctgtgttggggccc 406

                                                                       
Query: 178 tgggcggcctttccactcagggaacagctcgactcggcaatgccttgggcatgatcgggg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgggcggcctttccactcagggaacagctcgactcggcaatgccttgggcatgatcgggg 346

                                                    
Query: 238 ttgcaggaggcctggcagccacccttggaggcctgaagccg 278
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgcaggaggcctggcagccacccttggaggcctgaagccg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)