BAC Information

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BAC

Clone NameMSMg01-148P24
Chromosome13 (Build37)
Map Location 72,802,527 - 72,803,160
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148P24.T7 (MSMg01no148_p24.b1)MSMg01-148P24.TJ (MSMg01no148_p24.g1)
ACCAG351840AG351841
length724725
length of high quality
(start - end)
636 (45 - 680)578 (73 - 650)
definitionCHROMAT_FILE: MSMg01no148_p24.b1 PHD_FILE: MSMg01no148_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:05 2005CHROMAT_FILE: MSMg01no148_p24.g1 PHD_FILE: MSMg01no148_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGAAT
TCACCCTTACAGATCCACTGAGTTCCCTACCCCCACCCAGCACCCTGTTG
AGCTAACAGTGACAGCGAGGTAACTTCCTTCAGCATCACATGAATGGCTC
CACCTTGTTGCTCACCTGGAGGCTAACATTTCTGTCCCAGACTGACGCAG
AGGTAGCCTTCCTGACTCAGCCCAAACTTTTGTCCCTGGAGAGCTCATCT
TGACAAGGTGCCATCTTACATCACTGCTTCTCAGCTCTGGTTCAGGGACT
GAGCCAGCTGGTGTCATGGACATTGACTACTTGAGCAAATGCTTCCCTAG
ACCTTGGCACTGCCCTTGCCTGGCCATCTCTCTCTTCCCCACTGTCCTTC
CTTGACTAGTCTTGCTGCACACCGCTATAACACAGTTCTCCCACTTACCA
GTGAATGACACAGGAATGGCTCACAAGGCCTGAAGGTCAGATCTGGGAAA
TACTGGTACCAGATCCAAATGTGGCTCCGTGACCTGAGAGATGGCAGTGC
ACCTCGATAGTACTGCTTCTTACACCACCTACCTTCTCCCCACTTGACCT
TTGTGTATGGGTCCCTCATTCCAGGTCATGGTCCCTTCCTTTAGTCTTCT
TGCATGGCTTCCTTCTCTGCTCGAAAAAGATGTCACCCACCACCCATGGC
TAGTCTGCAAGGTACTTCTACCTN
GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAGAGA
AGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCTCCTCACACTAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGAGTGGAGAAAGAGGAACAC
TCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAACCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACGGGAGGATCCCGC
AATACCTCTCCTGGGCATATATCCAGAAGATATCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCCCACCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATTCCCCTCAACAGAGAAATGGATTCAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACCCAATCACAAAAGAACTCGCACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTA
AACGCATGAAACTCCAGAAGAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_p24.b1 MSMg01no148_p24.b1 CHROMAT_FILE:
MSMg01no148_p24.b1 PHD_FILE: MSMg01no148_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:05 2005
         (636 letters)



>mm_chr13_72802325_72803360
          Length = 1036

 Score = 1172 bits (606), Expect = 0.0
 Identities = 627/634 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcacccttacagatccactgagttccctacccccacccagcaccctgttgagctaa 62
           ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 836 gaattcacccttacagagcaactgagttccctacccccacccagcgccctgttgagctaa 777

                                                                       
Query: 63  cagtgacagcgaggtaacttccttcagcatcacatgaatggctccaccttgttgctcacc 122
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cagtgacagggaggtaacttccttcagcatcacatgaatggctccaccttgttgctcacc 717

                                                                       
Query: 123 tggaggctaacatttctgtcccagactgacgcagaggtagccttcctgactcagcccaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tggaggctaacatttctgtcccagactgacgcagaggtagccttcctgactcagcccaaa 657

                                                                       
Query: 183 cttttgtccctggagagctcatcttgacaaggtgccatcttacatcactgcttctcagct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cttttgtccctggagagctcatcttgacaaggtgccatcttacatcactgcttctcagct 597

                                                                       
Query: 243 ctggttcagggactgagccagctggtgtcatggacattgactacttgagcaaatgcttcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctggttcagggactgagccagctggtgtcatggacattgactacttgagcaaatgcttcc 537

                                                                       
Query: 303 ctagaccttggcactgcccttgcctggccatctctctcttccccactgtccttccttgac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctagaccttggcactgcccttgcctggccatctctctcttccccactgtccttccttgac 477

                                                                       
Query: 363 tagtcttgctgcacaccgctataacacagttctcccacttaccagtgaatgacacaggaa 422
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tagtcttgctgcagattgctataacacagttctcccacttaccagtgaatgacacaggaa 417

                                                                       
Query: 423 tggctcacaaggcctgaaggtcagatctgggaaatactggtaccagatccaaatgtggct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggctcacaaggcctgaaggtcagatctgggaaatactggtaccagatccaaatgtggct 357

                                                                       
Query: 483 ccgtgacctgagagatggcagtgcacctcgatagtactgcttcttacaccacctaccttc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccgtgacctgagagatggcagtgcacctcgatagtactgcttcttacaccacctaccttc 297

                                                                       
Query: 543 tccccacttgacctttgtgtatgggtccctcattccaggtcatggtcccttcctttagtc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tccccacttgacctttgtgtatgggtccctcattccaggtcatggtcccttcctttagtc 237

                                             
Query: 603 ttcttgcatggcttccttctctgctcgaaaaaga 636
           ||||||||||||||||||||||||||||||||||
Sbjct: 236 ttcttgcatggcttccttctctgctcgaaaaaga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)