BAC Information

Click to search

BAC

Clone NameMSMg01-150I04
Chromosome13 (Build37)
Map Location 23,414,722 - 23,582,480
singlet/doubletdoublet
Overlap geneZfp322a, Abt1, Btn1a1, Btn2a2
Upstream geneV1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I04.T7 (MSMg01no150_i04.b1)MSMg01-150I04.TJ (MSMg01no150_i04.g1)
ACCAG352928AG352929
length727758
length of high quality
(start - end)
461 (79 - 539)434 (74 - 507)
definitionCHROMAT_FILE: MSMg01no150_i04.b1 PHD_FILE: MSMg01no150_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:05 2005CHROMAT_FILE: MSMg01no150_i04.g1 PHD_FILE: MSMg01no150_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(23,582,356 - 23,582,480)(23,414,722 - 23,415,044)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACGATCCGCG
GAATTCAGATGTATATAGGAAGTATAATGTAGAAGAAAAATGGAGTTTAT
AAAAGGTTAAGTAGGAGTACTGGGGAGATGATAGCAGACAGACCATTATG
GAAGAAAATACTCTCAGGAATGAAGAGATGGCCTTTATACCAATTTACTT
TTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAA
TGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCAC
CCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAG
TTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATC
TTTTGATATATATGCCCCCCCCCCAAGAGCTCCGGGGTACTGGTTAGCTC
ATAATGTTGTTCCCCCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTA
CTTTTTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCCTTAGCTGAC
TGCGAGCCCCCACTTCTGTGTTTGCTGGCTCCCGGCCTAGTCTCACCCGA
GACAGCTACACCCGTGTCCTTCTAATAAAATCTTGCTAGCGCATGCCAAG
CCGCCCGCGTCTGGATGCCGATTACGGGGTCGGATCCCCGCCTATTGGCC
CCTCTACCTGGCCCCTCCTCTCATCTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGATTCTCCCTTATTTCTTACAAA
TAATATTCTTCATGTTCAATGTATTTCAAAATAACACTTCCTTAGTCTAT
AACTATTGAGTTCCATATTTTTATAATCGTTTTTCCTACAATAAGAGTTA
TACTCCAGTGAGGGCTGGTCCACTAGAAACATTAACATCCTCCCACTCAG
ATGTGGCAGGAGTTTCTTGGAAAGTAAGGCTTATCCGATGAAATGACTTT
ACTTTCTACACGTAGTCTTTGTTTAGCTGTTTAATTGATGACAACTTCGT
CCTTTATGACCATCTTCATTTGAAAAAGCTTTCTTGTCTTCTTTTATTTT
TTTATTTTTTTATTTTTTTACAGATTTTATTTATTTATTATATGTAAGTA
CACTGGAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTCGTTAC
GGATGGTTGCGAGCCCTTNTGTGCCTGCCGCGATTTGACCCCTGGACCTC
CGCAATATTAGCCTTTGCTCCCCCCCTCCGCCTTTTTTTTTTTTCCTTTG
CTCCCCCCTTACACTGTATCCCTCCCTGACCCCCTGTTCCCGACCCCCCC
CCCATGCGTTATATCACCCGCCTTTTTCCTTCCTTTTCTTCCCCCCCCCA
CCATACCTCTCCCCAATGTTAAATCTCCTCCGCCCTTTACCCCGCCCCCC
GTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i04.b1 MSMg01no150_i04.b1 CHROMAT_FILE:
MSMg01no150_i04.b1 PHD_FILE: MSMg01no150_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:05 2005
         (461 letters)



>mm_chr13_23582157_23583017
          Length = 861

 Score =  242 bits (125), Expect = 4e-68
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagaagaaaaatggagtttataaaaggttaagtaggagtactggggagatgatagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtagaagaaaaatggagtttataaaaggttaagtaggagtactggggagatgatagcaga 265

                                                                       
Query: 61  cagaccattatggaagaaaatactctcaggaatgaagagatggcctttataccaatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagaccattatggaagaaaatactctcaggaatgaagagatggcctttataccaatttac 205

                
Query: 121 ttttt 125
           |||||
Sbjct: 204 ttttt 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_i04.g1 MSMg01no150_i04.g1 CHROMAT_FILE:
MSMg01no150_i04.g1 PHD_FILE: MSMg01no150_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:05 2005
         (434 letters)



>mm_chr13_23414522_23415355
          Length = 834

 Score =  625 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggattctcccttatttcttacaaataatattcttcatgttcaatgtatttcaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggattctcccttatttcttacaaataatattcttcatgttcaatgtatttcaaaata 260

                                                                       
Query: 61  acacttccttagtctataactattgagttccatatttttataatcgtttttcctacaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacttccttagtctataactattgagttccatatttttataatcgtttttcctacaata 320

                                                                       
Query: 121 agagttatactccagtgagggctggtccactagaaacattaacatcctcccactcagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagttatactccagtgagggctggtccactagaaacattaacatcctcccactcagatg 380

                                                                       
Query: 181 tggcaggagtttcttggaaagtaaggcttatccgatgaaatgactttactttctacacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcaggagtttcttggaaagtaaggcttatccgatgaaatgactttactttctacacgt 440

                                                                       
Query: 241 agtctttgtttagctgtttaattgatgacaacttcgtcctttatgaccatcttcatttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctttgtttagctgtttaattgatgacaacttcgtcctttatgaccatcttcatttga 500

                                  
Query: 301 aaaagctttcttgtcttctttta 323
           |||||||||||||||||||||||
Sbjct: 501 aaaagctttcttgtcttctttta 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)