BAC Information

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BAC

Clone NameMSMg01-151B13
Chromosome13 (Build37)
Map Location 24,535,902 - 24,536,447
singlet/doubletsinglet
Overlap geneCmah
Upstream geneBtn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B13.T7 (MSMg01no151_b13.b1)MSMg01-151B13.TJ (MSMg01no151_b13.g1)
ACCAG353355AG353356
length729728
length of high quality
(start - end)
684 (46 - 729)546 (70 - 615)
definitionCHROMAT_FILE: MSMg01no151_b13.b1 PHD_FILE: MSMg01no151_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005CHROMAT_FILE: MSMg01no151_b13.g1 PHD_FILE: MSMg01no151_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCTTCTCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAATATCAAAGTAAATGGTGAGAAGTTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGTCCACTTTCTCCCTACCTATTCAACATTGT
ACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAATGACCCTAAAAATTTCGCCAGAGAACTCCTAAACCT
GATAAACAGCTTCAGTAAAGTAGCTGGATATAAAATTAACTCAAACAAGT
CAATGACCTTTCTCTACACAAAGGATAAACAGGCTGAGAGAGAAATTAGG
GAAACAACACCCTTTTCAATAGTCACAAATAATAAAAAATACCTTGGCAT
GACTCTAATTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTTA
ACAAATTAGAAAGGGCAATCTGCAAATTN
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGNCAAAATTCCATTTACTTTGGGGCCAAGCATTAGAGA
AAGAAAAACAGCAACAGAGCAAGACTCACGGCCTTTCTGCGTCTTCGGAA
AGCTGGGGCAAGAACTGCTGCAAGTTCAAGGCTGGACCGGGATACTGCAG
CAGACCCTGTCTCCCAAAGAGCAAACAGGGAAGGTAGGTGGAGCGAGTTG
AGGGAAGAAGAGAAAGAGCAACAGGATTCTCTCTACTCTCTTGAAATCAA
AGTCCTTCTGACCTGATAGAAGGCTTCTTTCCCCTCTCCTGGGGTTTCAT
GGAGGCAGCCTTGTGACTGAAGCAGTCACCTGGGGACTTGGCAAGTGAAA
AGGAAAGAACTAAAGGAAACGAAACTTTCCAGCTCAGAAGGTTCTCCTGC
TTATTCTGATCTTCCTCGATTTCGACCCCACCCCTGCTCTACCCTGCTCC
ACCCTTACCCCAGCAATGCGTCCTGTTCTCACCAGCATTCAACACCACTC
TTTGACTGTCTTGAGGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAG
AGAGGGAGAGAGAGACATTTTTTCTTTCTTTTTTNNTTTTTTTTTTTTTT
TTCTTTTCCCTTTTTCCTTTTCTCCCCTTTCTTTTCTTTCTGTTTTTTCT
CGCTGTTTTCTCGTTTGTTTTGTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b13.g1 MSMg01no151_b13.g1 CHROMAT_FILE:
MSMg01no151_b13.g1 PHD_FILE: MSMg01no151_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:49 2005
         (546 letters)



>mm_chr13_24535596_24536541
          Length = 946

 Score =  996 bits (515), Expect = 0.0
 Identities = 539/547 (98%), Gaps = 2/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccatttactttggggccaagcattagagaaagaaaaacagcaacagagcaagactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ttccatttactttggggccaagcattagagaaagaaaaacagcaacagagcaagactcac 793

                                                                       
Query: 61  ggcctttctgcgtcttcggaaagctggggcaagaactgctgcaagttcaaggctggaccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggcctttctgcgtcttcggaaagctggggcaagaactgctgcaagttcaaggctggaccg 733

                                                                       
Query: 121 ggatactgcagcagaccctgtctcccaaagagcaaacagggaaggtaggtggagcgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggatactgcagcagaccctgtctcccaaagagcaaacagggaaggtaggtggagcgagtt 673

                                                                       
Query: 181 gagggaagaagagaaagagcaacaggattctctctactctcttgaaatcaaagtccttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gagggaagaagagaaagagcaacaggattctctctactctcttgaaatcaaagtccttct 613

                                                                       
Query: 241 gacctgatagaaggcttctttcccctctcctggggtttcatggaggcagccttgtgactg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gacctgagagaaggcttctttcccctctcctggggtttcatggaggcagccttgtgactg 553

                                                                       
Query: 301 aagcagtcacctggggacttggcaagtgaaaaggaaagaactaaaggaaacgaaactttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 552 aagcagtcacctggggacttggcaagtgaaaaggaaagaactaaaggaaacaaaaccttc 493

                                                                       
Query: 361 cagctcagaaggttctcctgcttattctgatcttcctcgatttcgaccccacccctgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cagctcagaaggttctcctgcttattctgatcttcctcgatttcgaccccacccctgctc 433

                                                                       
Query: 421 taccctgctccacccttaccccagcaatgcgtcctgttctcaccagcattcaacaccact 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 432 taccctgctccacccttaccccagcaatgtgtcctgttctcaccagcattcaacaccact 373

                                                                       
Query: 481 ctttgactgtcttgaggagagagagagagagagagagagagg-gagagggagagagggag 539
           ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||
Sbjct: 372 ctttgactgtcttgaggagagagagagagagagggagag-ggagagagggagagagagag 314

                  
Query: 540 agagaga 546
           |||||||
Sbjct: 313 agagaga 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)