BAC Information

Click to search

BAC

Clone NameMSMg01-151I12
Chromosome13 (Build37)
Map Location 89,647,590 - 89,647,694
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I12.T7 (MSMg01no151_i12.b1)MSMg01-151I12.TJ (MSMg01no151_i12.g1)
ACCAG353670AG353671
length768718
length of high quality
(start - end)
105 (158 - 262)85 (338 - 422)
definitionCHROMAT_FILE: MSMg01no151_i12.b1 PHD_FILE: MSMg01no151_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:22 2005CHROMAT_FILE: MSMg01no151_i12.g1 PHD_FILE: MSMg01no151_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTGGAGTTCATTGTACACTGCATGACATGAATACCAGAACCTAGAC
TCAAGTCCTCTAGAAGAGGAGAATATGTTCTTAACCACTCAGTCATCCCT
CCAGCCCCAAAGGTTGTTCTACTATTTGCTCTTTTTCTGATGAACTTTAT
TATACTTAGTGTGAACTATTGACGCCACATGAATCTAGAGTGAGAAAAGA
AGGAACCCCAACTAAGAATTGCTCCCATCTGATTGGCTGTTGCTGTTTTG
TCAATCATTATCTTAATTACTAATTGATGTACAAATTCCAACACACTGCG
AACTATGTCATCTTCTAAAAGGCCTTTTTTCAGCTACCCTCGAATAGCAC
ATGATCAATTCTCCACANCCCCCAAACAAAAAGCAGTGTTCTTCTGTAGA
TTTTGCTTAATACTCCTGCCTTGAGCCCCACACATGGCTTCCCTCGTTAA
TGAACTACTCCCTGCTAGCCCAAGAACACCTTCCTCCCCATGCTGTTCCC
GTTCTGCGCCGCTCCCGCCTACCTATATTCTACCCTCCTTCTCGACCCTC
CACTCCTTCTCTTTTTTTTTCTCTCCTTTCCCTTCTCTTCTCTCCCCCCC
CCACCTCTTTTGCCCCCCCTCACCCTTCCTTCCCTCCTCCCCCTCCCCCT
CTGTCCCCCCCCCCCTTTTTTCCCCCTCCCGCAATCCTTAGCCCTTATCT
TCCTCTCCCCCTCTCCCN
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATCCATCTCCAAATTATTG
CATGGAACTAAAGTTCTGATACTCGGACTTTAAGGGTCCCAAAAGGTCTT
TCTCCTCAAACAATGAATATCTTATCTCCTATGACTTATCATACCCACAC
ACACCACGCACACAGACAAACACACACTAAAGCACAGACTTCATACACAC
ACACACACAAACACAGGCAAGAGAGTAAGAGAGAGAGAGAGATTGCACTC
ACATACTATCAGAGACAGACACACCCGTCTTATGCCTATGTATACATGAT
TCTTCCAGGGAGAAAGATGAAGGTGCTGTATCACCCCCAAGTCCTAAATG
CTTTTTACATTTAGATGATATGACCCACCCCATCTAAATAATCCAATAGC
CAAAGTTACAATTACAATTAAATCAGTTAATTTTGGCACATGTCAGTACA
AACCCACTCCCTGCAGGATTTCCTTTGCCAGAAACATAGCTGCTCCATTC
TTGGCTCAAGAAACATGTTTCTTGTCTAGAAACCTCAAATGGCCTGAGAT
GCTCATGCGCCACGGCGCATTGACCCTTTCCAGTCTGTTGCTACTATCTC
TCATTGTTTCTAAACAGTGTAGCCCAGAAAAACTTCCCTCCGAAACCTGA
AATACTGAGTATGATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i12.b1 MSMg01no151_i12.b1 CHROMAT_FILE:
MSMg01no151_i12.b1 PHD_FILE: MSMg01no151_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:22 2005
         (105 letters)



>mm_chr13_89647390_89647894
          Length = 505

 Score =  188 bits (97), Expect = 1e-52
 Identities = 103/105 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggttgttctactatttgctctttttctgatgaactttattatacttagtgtgaact 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggttgttttactatttgctctttttctgatgaactttattatacttagtgtgaact 260

                                                        
Query: 61  attgacgccacatgaatctagagtgagaaaagaaggaaccccaac 105
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgatgccacatgaatctagagtgagaaaagaaggaaccccaac 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)