BAC Information

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BAC

Clone NameMSMg01-153M22
Chromosome13 (Build37)
Map Location 44,618,517 - 44,618,915
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
Downstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153M22.T7 (MSMg01no153_m22.b1)MSMg01-153M22.TJ (MSMg01no153_m22.g1)
ACCAG355293AG355294
length726735
length of high quality
(start - end)
35 (210 - 244)392 (62 - 453)
definitionCHROMAT_FILE: MSMg01no153_m22.b1 PHD_FILE: MSMg01no153_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:16 2005CHROMAT_FILE: MSMg01no153_m22.g1 PHD_FILE: MSMg01no153_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCTGCGT
ACATACTGCCCATCTCTTATGACCAATCACTGAGCTAGGCTTTGTACTCA
CACCGCTCCTGCCCTCTTGGAGCTCACATTAGGCTAGTGGGCATATCCCT
GTGAGGTGGCCCTAAGAGAGTGTCTCAGACCTCAAGGTTGGGTTGACACC
ATCCACAATCTATGAAGGCTGACTCTGAGGAAAGGACGCATGTCACGACT
CCATAGGTACTGAATTTTCTTATACGTGATACATTTTTAAAATGTGTATC
TTTAGCCTTGTGGTGGTGGTGCACACCTTTAATCCCAGAACTCAGGAGAC
AGAGGCAGGCTCATCTCTAACAGTCTCAAAGTCAGTCTGGTCTATAGAGT
GAGTTTCATGACAGCAAAGGATACTCAGAGAACCCCTGTCTCAGGATGAG
GATGGGCGGCTATTTCTTTATGGAAGTTATCATGTTTTGAGCCTGATATA
CATAGGACTGGCTAAGTCACACTAATACATCTATCTATGACGTCATATGC
TTCCTTTTTTCTTCCTTTTGTTCTGAGACCAGTTAAGTCTACTCTTTTAG
AGATTTACGAACTACATTATACTAGTAGCTGTACTAAATGGTTGAATAAT
ATCTCTCTTGTTCTCACCCTTCCTTGCCATTGAAATTTTGCCCCTTTGAC
CCTTACTCCCTTTGTCCTTTACTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCGCAATTCTTTCAGGAGACTATTAGGTAGATAAGAAAGACGCAT
TAGCCAGGTGAGAAGACCCCAGAAGACATCTTCTGTGGATGCTGAGTCTT
TAAATGTCACCAGACTAACCCATATTGACTGTGATCAGGAAAAAAAAAAA
AACCTCACTTAGATAGGGTTCCAGAAGGCACAATCAGGTAGAAACTGACC
AGGACCTGAACATCTAAGACATCACTGTGATGGTTTGAGTAGCATCAGGG
TAGGCTCACGTCACAATGGACCATGACCAGTGGAAATAGTGTGGTGGGGA
TTTAGAGTTCAAATCTTAAGACTCACCGAGTCAGCATGTCTTTTTGGAGG
CCTTGTAATTAAGGCAGCTTCTGCTAGCATCCACGGGAATAGTAAAGCCA
TGGAATGTAAAGAAATACTGTGGCATAGCACACCCACCGTGATGTTGAAT
ATCAGGTGGGAGCTCCAGGGGGCTGTTTTGATGCTTAGCATTCAAAGCTG
TGCCTGTAAGATGGCCTGAGTGATGGTTTTCCTTATAAAACTAACAAGAA
TATGATAGACCTATAGCCCACTGAACTGGGATTCATGGCCAGCCTTTCCC
TTCAATTCATTCATCCATCATTGGTTGGCCTTTCCATGCTCTTGAATTCA
AATCAATTCCCTTCCTTTCCTTGAAATAATTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_m22.g1 MSMg01no153_m22.g1 CHROMAT_FILE:
MSMg01no153_m22.g1 PHD_FILE: MSMg01no153_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:16 2005
         (392 letters)



>mm_chr13_44618189_44618980
          Length = 792

 Score =  710 bits (367), Expect = 0.0
 Identities = 388/399 (97%), Gaps = 7/399 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttcaggagactattaggtagataagaaagacgcattagccaggtgagaagacccca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 727 ttctttcaggagactattaggtagataagaaaaacgcattagccaggtgagaagacccca 668

                                                                       
Query: 61  gaagacatcttctgtggatgctgagtctttaaatgtcaccagactaacccatattgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaagacatcttctgtggatgctgagtctttaaatgtcaccagactaacccatattgactg 608

                                                                       
Query: 121 tgatcag-------gaaaaaaaaaaaaacctcacttagatagggttccagaaggcacaat 173
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgatcagaaaaaaaaaaaaaaaaaaaaacctcacttagatagggttccagaaggcacaat 548

                                                                       
Query: 174 caggtagaaactgaccaggacctgaacatctaagacatcactgtgatggtttgagtagca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caggtagaaactgaccaggacctgaacatctaagacatcactgtgatggtttgagtagca 488

                                                                       
Query: 234 tcagggtaggctcacgtcacaatggaccatgaccagtggaaatagtgtggtggggattta 293
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 487 tcagggtaggctcacgtcacaatggaccaggaccagtggaaatagtgtggtggggatttg 428

                                                                       
Query: 294 gagttcaaatcttaagactcaccgagtcagcatgtctttttggaggccttgtaattaagg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gagttcaaatcttaagactcaccgagtcagcatgtctttttggaggccttgtaattaagg 368

                                                  
Query: 354 cagcttctgctagcatccacgggaatagtaaagccatgg 392
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagcttctgctagcatccacgggaatagtaaagccatgg 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)