BAC Information

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BAC

Clone NameMSMg01-154B24
Chromosome13 (Build37)
Map Location 75,243,445 - 75,244,070
singlet/doubletsinglet
Overlap genePcsk1
Upstream geneSlc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954
Downstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154B24.T7 (MSMg01no154_b24.b1)MSMg01-154B24.TJ (MSMg01no154_b24.g1)
ACCAG355506AG355507
length729725
length of high quality
(start - end)
668 (62 - 729)657 (69 - 725)
definitionCHROMAT_FILE: MSMg01no154_b24.b1 PHD_FILE: MSMg01no154_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:40 2005CHROMAT_FILE: MSMg01no154_b24.g1 PHD_FILE: MSMg01no154_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
ACATAATACACTCCTAACCCAAAGCATCCAGGAAATTCAGGACACAATGA
AAAGACCAAATCTAAGGATAATCAGAATAGAGGAGAAAGAAGCTTCCCAG
CCTAAAGGACCAGAAAACATCTTCAACAAAATCATAGAAGAAAACATTCC
CAACCTAAAGAAAGAGATGGACATAAAGGTACAAGAAGTGTATAGAACAC
CAAATAAATGGGACCAGAAAAGAAAATCTTCTTGTTACATAATAACCAAA
ACACTACATGCATAGAGCAAAGAAAGGATATTAAAAGCTGCAAGGGAAAA
GAGTCAAGTAACATACAAAGGTAGACCTATCAAAATTAAACCAGACTTCT
CAACAGAAACTGTGAAAGCCAGAAGAGCCTGATCAGAGGTCATGCAGAAT
CTAAAAGAATACAATGCCAGCCTAGGCTACTATACCCAGCAAAATTCTCA
ACTGACATAGATAGAGAAACCAAAATATTACAGAACAAAACCAAATTCAA
ACAGTATCTATCTACCTGCCTACAGAGGAAAAATCCAACACAAGAAGGTA
TCTATACCAAAGAATAGACAAGCATCTCACAACAAAGTAAAAAGGAGAGA
ACGACAAGCACACAAAGCCACCACAAAAACAAACATATCAGGAAGCAACA
GTCATCTATCTTTAATATCTCTCAATATG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCATGACTCTGGATTCCTCTCTTTATTTTCT
ACGGACCTTCCTTCCCTTTGCTATTTTGAGCCTAGCATTGGTAACCTCTG
CTTATTCTAATTAGTCCCCTCTTGTTCACTTCTAATTTATATAAATGGCT
TTTTTTATTAAAATGCCACACTGAACAAAGCAGCTAATGATTCTCCTTTT
TGGCATTTAAGGTAGCATCTTTATATAACAAAAACATATTTTTTAAAGAT
CATTTTCAAAAACTATTCTTTGCTTATAAGCAAAGAATATCTATAGAATG
AACAGGAAAAATCTGTCTATTCCTTCTTAGTAAGAGCTTAATACCTATCT
CTTCTAAAGCAGAGCACAGAGAATATTAGATTTCAATCAAGCGCCATTCA
CCATTCCATTATTCTTCCTGCAAGGATGTCTGGGCTATATTTAGCTATCC
ATCTTCAAGAAATCCAGGCCTACTGATTTACTTGCAAGTCACACTCAAAT
TCTGCAGCAAATTTTGTAAGAAAGTCATTTTCTCATTGGTTGAAGAAAAT
GGTTGGTCCCCTCCCACCATTTTATAGCAGGGAACACAAACCTCCAATTA
AAGAGCCAAAATACAGGAAAAGACTGCCTTACCTCCAACTTTGGAATTAT
ATGCAACTCCAACCCCACACTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_b24.g1 MSMg01no154_b24.g1 CHROMAT_FILE:
MSMg01no154_b24.g1 PHD_FILE: MSMg01no154_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:40 2005
         (657 letters)



>mm_chr13_75243213_75244270
          Length = 1058

 Score = 1180 bits (610), Expect = 0.0
 Identities = 622/626 (99%), Gaps = 1/626 (0%)
 Strand = Plus / Minus

                                                                       
Query: 33  acggaccttccttccctttgctattttgagcctagcattggtaacctctgcttattctaa 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 acggaccttccttccctttgctattttgagcctagcattggtaacctctgcttattctaa 799

                                                                       
Query: 93  ttagtcccctcttgttcacttctaatttatataaatggc-tttttttattaaaatgccac 151
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 798 ttagtcccctcttgttcacttctaatttatataaatggcttttttttattaaaatgccac 739

                                                                       
Query: 152 actgaacaaagcagctaatgattctcctttttggcatttaaggtagcatctttatataac 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actgaacaaagcagctaatgattctcctttttggcatttaaggtagcatctttatataac 679

                                                                       
Query: 212 aaaaacatattttttaaagatcattttcaaaaactattctttgcttataagcaaagaata 271
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaacatattttttaaagaccattttcaaaaactattctttgcttataagcaaagaata 619

                                                                       
Query: 272 tctatagaatgaacaggaaaaatctgtctattccttcttagtaagagcttaatacctatc 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctatagaatgaacaggaaaaatctgtctattccttcttagtaagagcttaatacctatc 559

                                                                       
Query: 332 tcttctaaagcagagcacagagaatattagatttcaatcaagcgccattcaccattccat 391
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 tcttctaaagcagagcacagagaatattagatttcaatcaagcaccattcaccattccat 499

                                                                       
Query: 392 tattcttcctgcaaggatgtctgggctatatttagctatccatcttcaagaaatccaggc 451
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tattcttcctgcgaggatgtctgggctatatttagctatccatcttcaagaaatccaggc 439

                                                                       
Query: 452 ctactgatttacttgcaagtcacactcaaattctgcagcaaattttgtaagaaagtcatt 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctactgatttacttgcaagtcacactcaaattctgcagcaaattttgtaagaaagtcatt 379

                                                                       
Query: 512 ttctcattggttgaagaaaatggttggtcccctcccaccattttatagcagggaacacaa 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttctcattggttgaagaaaatggttggtcccctcccaccattttatagcagggaacacaa 319

                                                                       
Query: 572 acctccaattaaagagccaaaatacaggaaaagactgccttacctccaactttggaatta 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acctccaattaaagagccaaaatacaggaaaagactgccttacctccaactttggaatta 259

                                     
Query: 632 tatgcaactccaaccccacacttgtg 657
           ||||||||||||||||||||||||||
Sbjct: 258 tatgcaactccaaccccacacttgtg 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space:   678056
Effective search space used:   678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)