BAC Information

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BAC

Clone NameMSMg01-154C02
Chromosome13 (Build37)
Map Location 79,308,703 - 79,309,200
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154C02.T7 (MSMg01no154_c02.b1)MSMg01-154C02.TJ (MSMg01no154_c02.g1)
ACCAG355510AG355511
length685816
length of high quality
(start - end)		506 (33 - 538)---
definitionCHROMAT_FILE: MSMg01no154_c02.b1 PHD_FILE: MSMg01no154_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:40 2005CHROMAT_FILE: MSMg01no154_c02.g1 PHD_FILE: MSMg01no154_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTAAACGACTCCTATATCGAGAGGACCGCGGAATTCAAATTGT
CCTCAAAAGCCAGAAAAGGCAAGGAAACAGACCCTCCTCTACAGATTCCA
TAAGGAACAACCCTGGCAGAATCATGGCTTCAGACCTGTGAAAGACACTT
CAGATTTCTGAATTCTAAGACTGTGAGAATTAGGCTTGTTTTAAGTCACT
AAATTCTTGCAGTTTGTTACTGAAGCAAAGGAAATTATATATATATATAT
ATATATATCAAAATATCTCATAAGTTTTCTTTTATTTTCTTTTTATTATC
ACTACATCTATCACTTTTTACTATGGATATTCCATAAGAAATTTGGAATA
TTTTAGCAACATATATTCATTGAACTTTATTTATGAGCAACAAAACTCTA
GGGAATGATGAAAATGCCAAACACTACATGCTATCATTGCCCTGGTTGCT
TAATTAAGGCAAATTTTAGGCTGCATTTTATTTTTCACTTTGTTTTTTTT
GTTTAAAGAATAGATTTTGAGTCATAGCGAGGCTATGTGGACTGAATGAT
TCCCCAGCAGCAAAGAGAGACTGAGAAGGAGTATGCCTTTAGAGGACGTA
AGGACGAAATGACATTTGCAGCTCACAATTAAATCTTAAGGGATTGGGCC
AATGATAATGACCAGGGTATACCAACTTTATTTTG

TTTTTTTTTTNNNNCNNNNNNTTTTTTNTTCTTNNTCTTTNCCCCCTCTC
CCTTTCCTCCCCTTCCTTATTAAATACCCACATTCCACCTCCCCCACTCC
CCCTACGTTCGCCTTNTACATTACCTTACATCTTGGTCCACCCCACCTCC
TAAATACACATACTACCCTATATCACTGTTAATCTCTCCTACAAACAACT
CACGTAATGGATCACTTTATATTTATTTATTAAACGCGACGGGCCGATCG
GTAGAGGATCTGGGGGGAATATCGGGCCACAGGTGATCAGCACTTTCGCG
CTTAACACTTATCAAAATCATACGTTAATATGACTAGATCGGAAAGAGAG
AACCGGGAATCGCGGCTTCTCCCCGTAGCCCAAAGACATCCCGACGTAGG
AGGGGGGGGGGGATCAGCGGTCCTGTTTGGCACATTTGGTGTTAGCTAGC
ACTTATACAGAATAGCGATAACCCCAAGGGAAAAAAGGGTAGATACTGAA
TTAGACCCTTGAGGCGTCGCGGGTTTTGCGGTTGGCCGTTTGCCCGTCTT
TGAGGGGTCGAGAGCGTGGAGCCGTGGTGGACGTAAGAGGAGGAGACGGC
GATCGATGTATGGGAAATGGGATGGGGTAATAGGGGTGATGGTGTTGTGC
GGGCCCCCCCCCCNCGTAAATGATCNNCCTACTNTTTTTGTCCCCNCCCG
CTATTATTGAAAACCAAAACAAACCGTTCTTTTTGTTTTATTTTGGCCCA
TCGAAACCACTTTTTACCACATTAGAGGGCGCCAAATTCAGCTCTATAAT
GACGGCGTGTGGGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_c02.b1 MSMg01no154_c02.b1 CHROMAT_FILE:
MSMg01no154_c02.b1 PHD_FILE: MSMg01no154_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:40 2005
         (506 letters)



>mm_chr13_79308495_79309400
          Length = 906

 Score =  924 bits (478), Expect = 0.0
 Identities = 495/502 (98%), Gaps = 4/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaaattgtcctcaaaagccagaaaaggcaaggaaacagaccctcctctacagat 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ggaattcaaattgtcctgaaaagccagaaaaggcaaggaaacagaccctcctctacagat 268

                                                                       
Query: 65  tccataaggaacaaccctggcagaatcatggcttcagacctgtgaaagacacttcagatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccataaggaacaaccctggcagaatcatggcttcagacctgtgaaagacacttcagatt 328

                                                                       
Query: 125 tctgaattctaagactgtgagaattaggcttgttttaagtcactaaattcttgcagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctgaattctaagactgtgagaattaggcttgttttaagtcactaaattcttgcagtttg 388

                                                                       
Query: 185 ttactgaagcaaaggaaattatatatatatatatatatatatcaaaatatctcataagtt 244
           |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||
Sbjct: 389 ttactgaagcaaaggaaatt-t---tatatatatatatatatcaaaatatctcataagtt 444

                                                                       
Query: 245 ttcttttattttctttttattatcactacatctatcactttttactatggatattccata 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 ttcttttattttctttttattatcactacatctatcacttttttctatggatattccata 504

                                                                       
Query: 305 agaaatttggaatattttagcaacatatattcattgaactttatttatgagcaacaaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaatttggaatattttagcaacatatattcattgaactttatttatgagcaacaaaac 564

                                                                       
Query: 365 tctagggaatgatgaaaatgccaaacactacatgctatcattgccctggttgcttaatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctagggaatgatgaaaatgccaaacactacatgctatcattgccctggttgcttaatta 624

                                                                       
Query: 425 aggcaaattttaggctgcattttatttttcactttgttttttttgtttaaagaatagatt 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 aggcaaattttaggctgcattttatttttcactttgttttttctgtttaaagaatagatt 684

                                 
Query: 485 ttgagtcatagcgaggctatgt 506
           ||||||||||||||||||||||
Sbjct: 685 ttgagtcatagcgaggctatgt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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