BAC Information

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BAC

Clone NameMSMg01-154L20
Chromosome13 (Build37)
Map Location 97,599,837 - 97,600,350
singlet/doubletsinglet
Overlap geneLOC625662
Upstream geneIqgap2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456
Downstream gene1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L20.T7 (MSMg01no154_l20.b1)MSMg01-154L20.TJ (MSMg01no154_l20.g1)
ACCAG355950AG355951
length717720
length of high quality
(start - end)
574 (37 - 610)542 (72 - 613)
definitionCHROMAT_FILE: MSMg01no154_l20.b1 PHD_FILE: MSMg01no154_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005CHROMAT_FILE: MSMg01no154_l20.g1 PHD_FILE: MSMg01no154_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTCCTATTTCAAGAGATCCGCGGAATTCAAAA
TTTTTTCGTCTCTTTACTCATGGAAGGCTTTTCTTTCTCTTTCAATTATG
GCAGGTAGTTTTGCTGGGTTTAATCGTCTATCCTGGCTACCATAGTCTTT
TAGGAGCTGGAATGCATTGTTCCAGGCTCTTCTGCCTTTCAATGTTTCCA
TTGAGAAATCAGCTCCTTATTCTGTTGGATTTCCCTTTATATGTGACTTG
TGTTATTTCTCTTGAAGCGTTCAATATTCTTTGTTATGTATGCTTAGTGT
TGTAACTATGATATACTGTGGGGATTTTCTTTTCTGGTCTTGTCATTTTG
TGTGCTATGTGCTTCTTGTGTCTACATGGACATGTCTTTCCTTAGCCTGG
GGAAGCTTCTATGATTTTTCTTGAAGATCTTGGCTTGGAATTCTTCTCCC
TCATTGATGTGCATAATTTGAATTTTTTCCATGCTTTCTCACATTTCCTG
TATGTTCCTTTTCTGTTTAAAGTGTTCATATCTCTTGGTTATGTGGTTTA
GATCCTCTGATTTATCATTGAGTCCTGATGTACTATTTTCTACTTGATTC
ATTCTACTCATAAGGCTTTTCTTTGGGTTTTCTAGTTGAGCTATTGGGTT
TTCTCACTTGATTCCTCATTTCAGTTTTGAGTTCTTTGTTAATGCTTCCA
TCTCCCGATTGAAATGC
CAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTGGATCCCACAGTGGGCAGGACTAACT
CCCCAGAGCCAGAGCTGTCCTCTGCCTTCCACATATCCACCTAGCCCACA
CCTGGGCTCACACACACGAACACACACACACACACACACACACACACACA
CACACACACACACACACACACACGCTAAAAATATATAAGAATTTTAAAAA
TAGAGGGAATATGTGAAATCATGAAAATGTTTTAAATTACAACATGACTA
TATAGTTTCCAATATTCATTATAAGCTTCGGGGAGGAGTGTTGACCTAGC
ATATAAACGGGCTTTCATTTGATCCCTAGCATTTCAAAACAAAAATTAAA
ATAAAGCCCCCTTCAACTGAAATTTAAAAATAAATGTCTTCTAGAAGTAT
ACATATTTCTTAAGACAAATTTCACATTATATTGGGAAATAGGACGCTAA
TGAATGACAAAATTCAAATGTTCAGGCTTCAGAAATAGTCAAATCACCTG
CTAAAGCATAATAAATCGATAAATTCTCTCAAAAAGAAAGAACAAAGTCC
AAGTACTAAGGAGAAAGATTAAGAATTCCTTTGCATGAAGGAAATTTCTT
CAGGCATAGGCAAAATTCTTATGTCATTTTGCTAGAGAACCAGGAATTAG
ATTATAAGAGGGGCATTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l20.g1 MSMg01no154_l20.g1 CHROMAT_FILE:
MSMg01no154_l20.g1 PHD_FILE: MSMg01no154_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:27 2005
         (542 letters)



>mm_chr13_97599485_97600426
          Length = 942

 Score =  928 bits (480), Expect = 0.0
 Identities = 513/542 (94%), Gaps = 28/542 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggatcccacagtgggcaggactaactccccagagccagagctgtcctctgccttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cctggatcccacagtgggcaggactaactccccagagccagagctgtcctctgccttcca 807

                                                                       
Query: 61  catatccacctagcccacacctgggctcacacacacgaacacacacacacacacacacac 120
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 806 catatccacctagcccacacctgggctcacacacacga---------------------- 769

                                                                       
Query: 121 acacacacacacacacacacacacacacacacgctaaaaatatataagaattttaaaaat 180
                 |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 768 ------acacacacacacacacacacacacacgctaaaaatatataggaattttaaaaat 715

                                                                       
Query: 181 agagggaatatgtgaaatcatgaaaatgttttaaattacaacatgactatatagtttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agagggaatatgtgaaatcatgaaaatgttttaaattacaacatgactatatagtttcca 655

                                                                       
Query: 241 atattcattataagcttcggggaggagtgttgacctagcatataaacgggctttcatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atattcattataagcttcggggaggagtgttgacctagcatataaacgggctttcatttg 595

                                                                       
Query: 301 atccctagcatttcaaaacaaaaattaaaataaagcccccttcaactgaaatttaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atccctagcatttcaaaacaaaaattaaaataaagcccccttcaactgaaatttaaaaat 535

                                                                       
Query: 361 aaatgtcttctagaagtatacatatttcttaagacaaatttcacattatattgggaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaatgtcttctagaagtatacatatttcttaagacaaatttcacattatattgggaaata 475

                                                                       
Query: 421 ggacgctaatgaatgacaaaattcaaatgttcaggcttcagaaatagtcaaatcacctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggacgctaatgaatgacaaaattcaaatgttcaggcttcagaaatagtcaaatcacctgc 415

                                                                       
Query: 481 taaagcataataaatcgataaattctctcaaaaagaaagaacaaagtccaagtactaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taaagcataataaatcgataaattctctcaaaaagaaagaacaaagtccaagtactaagg 355

             
Query: 541 ag 542
           ||
Sbjct: 354 ag 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)