Query= MSMg01no154_o03.b1 MSMg01no154_o03.b1 CHROMAT_FILE:
MSMg01no154_o03.b1 PHD_FILE: MSMg01no154_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:38 2005
(512 letters)
>mm_chr13_116903753_116904664
Length = 912
Score = 940 bits (486), Expect = 0.0
Identities = 506/518 (97%), Gaps = 9/518 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgtcgaaaatgcggaggaagtattttgggagccacaggaatcaatgacaatac 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattctgtcgaaaatggggaggaagtattttgggagccacaggaatcaatgacaatac 254
Query: 64 aaatacaaaaaaaaaaa---------aaaacagaaaacaaacaaacacaccctgcagaat 114
||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 255 aaatacaaaaaaaaaaaaaaagaaagaaaaaagaaaacaaacaaacacaccctgcagaat 314
Query: 115 caacttaccggggcccataagggttcacagagactgaactaccagaaagaatacacagga 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caacttaccggggcccataagggttcacagagactgaactaccagaaagaatacacagga 374
Query: 175 ctgacctaggccctctgcacatatgtgacagttgtgtagctaggtattctcctaaaccag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgacctaggccctctgcacatatgtgacagttgtgtagctaggtattctcctaaaccag 434
Query: 235 tagttgtctgtgactctgttgttgcctggctttaggactctttcccctactaggatgcct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tagttgtctgtgactctgttgttgcctggctttaggactctttcccctactaggatgcct 494
Query: 295 tgtctgacctcaatatgagaagatgcccctatcatactgcaatttgatataaccagtgga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtctgacctcaatatgagaagatgcccctatcatactgcaatttgatataaccagtgga 554
Query: 355 gttaatatccattaaatttctagcatgggttaattggcatggtaaataaacccttagtgt 414
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 gttaatatccattaaatttctagcatgggttaattggcatggtaaatacacccttagtgt 614
Query: 415 ggctggggctaatctgtgtgctggtctctaggactgactataaaaggaaacaaagcaaga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggctggggctaatctgtgtgctggtctctaggactgactataaaaggaaacaaagcaaga 674
Query: 475 gcaccaattgttttctcaggttcctggctcttggtgaa 512
||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcaccaattgttttctcaggttcctggctcttggtgaa 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_o03.g1 MSMg01no154_o03.g1 CHROMAT_FILE:
MSMg01no154_o03.g1 PHD_FILE: MSMg01no154_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:38 2005
(477 letters)
>mm_chr13_116976834_116977710
Length = 877
Score = 876 bits (453), Expect = 0.0
Identities = 471/477 (98%)
Strand = Plus / Minus
Query: 1 taagagctggctgtgccattgctttggcagctagaagccaaggcgagtggagctcctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 taagagctggctgtgccattgctttggcagctagaagccaaggcgagtggagctcctgga 493
Query: 61 gatgagcgcgggtgctgatagggtgtacttcaacctttcagtttgtacacaagtctcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gatgagcgcgggtgctgatagggtgtacttcaacctttcagtttgtacacaagtctcaga 433
Query: 121 gccacagcactagctgccaattggccttcttgtccttatttctaagccccaagtaggagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gccacagcactagctgccaattggccttcttgtccttatttctaagccccaagtaggagt 373
Query: 181 gatgttgttgaggatctactggcccttaagagtgattcgctctgcataatgactctactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gatgttgttgaggatctactggcccttaagagtgattcgctctgcataatgactctactt 313
Query: 241 agcacgttcagatgaagtgctggttcctaagtgatgatctgctcctcagtcatgaatacc 300
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 312 agcacgttcagatgaagtgctggttcctaagtgatgatctgctccttggacatgaatacc 253
Query: 301 taccattcagttaagaagtccagatataaggtttaggagataaactgaaaccgactgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taccattcagttaagaagtccagatataaggtttaggagataaactgaaaccgactgcag 193
Query: 361 tgggggatacgggctgcttccatttgtcagagctcacccgacacctaaaatagatgattt 420
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 192 tgggggatacgggctgcttccatttgtcagagctcatccgacacttaaaatagatgattt 133
Query: 421 tatggtaagcaaattatgccttaatagaattgaatttaaaagggaccacggtgtgtg 477
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 132 tatggtaagcaaattatgccttaatagaattgattttaaaagggaccacggtgtgtg 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
