Query= MSMg01no154_o13.b1 MSMg01no154_o13.b1 CHROMAT_FILE:
MSMg01no154_o13.b1 PHD_FILE: MSMg01no154_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:40 2005
(534 letters)
>mm_chr13_94037610_94038543
Length = 934
Score = 977 bits (505), Expect = 0.0
Identities = 530/543 (97%), Gaps = 10/543 (1%)
Strand = Plus / Plus
Query: 1 atagaagactttctgtttgggtgttacagaatctgcctggctcggcttccatgcttgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atagaagactttctgtttgggtgttacagaatctgcctggctcggcttccatgcttgagg 252
Query: 61 tcacagagctgggatggtatgtacactcctgcataaaaa-gcttacagggtctgtacaga 119
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 253 tcacagagctgggatggtacgtacactcctgcataaaaaagcttacagggtctgtacaga 312
Query: 120 ggcatcaaaggaaaagaatgcctttgtaagcattttaagtcagcctccccgagtctcaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggcatcaaaggaaaagaatgcctttgtaagcattttaagtcagcctccccgagtctcaca 372
Query: 180 tggtctgtttcttgtctctttaacagcctcttgtttttgagatagtggagttatccaggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tggtctgtttcttgtctctttaacagcctcttgtttttgagatagtggagttatccaggt 432
Query: 240 cgcctcatacgctagacaagctctagaccctcaagaccctgacagctattctaaagcagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cgcctcatacgctagacaagctctagaccctcaagaccctgacagctattctaaagcagc 492
Query: 300 tgattatgagataaaactaaaaggagggaatgaaggcagttcccacatcagttaaaacaa 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 493 tgattatgagataaaactaaaaggagggaatgagggcagttcccacatcagttaaaacaa 552
Query: 360 aaaaaacaaaaaacaaaaaacagaacaaaccagaagatgacaacacaaa--------tac 411
||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 553 aaaaa-caaaaaacaaaaaacagaacaaaccagaagatgacaacacaaacaaataaatac 611
Query: 412 ctagggcttgcacattgcttaattattacagtgagcccttcaggtaccattattaggtac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctagggcttgcacattgcttaattattacagtgagcccttcaggtaccattattaggtac 671
Query: 472 atattaggatctagaaaattgaggatcacagatattaaatgatttactcagtactatctg 531
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 atattaggatctagaaaattgagggtcacagatattaaatgatttactcagtactatctg 731
Query: 532 gct 534
|||
Sbjct: 732 gct 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_o13.g1 MSMg01no154_o13.g1 CHROMAT_FILE:
MSMg01no154_o13.g1 PHD_FILE: MSMg01no154_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:40 2005
(595 letters)
>mm_chr13_94192919_94193914
Length = 996
Score = 1091 bits (564), Expect = 0.0
Identities = 588/596 (98%), Gaps = 1/596 (0%)
Strand = Plus / Minus
Query: 1 attctttttttttttc-aaaataatttgcactgttattattaacaacactggggaccata 59
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 796 attctttttttttttcaaaaataatttgcactgttattattaacagcactggggaccata 737
Query: 60 tctatctagctgcttcactttttattagctggccactagtgagccagatccagtgccaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tctatctagctgcttcactttttattagctggccactagtgagccagatccagtgccaca 677
Query: 120 gtgctctggtggcagtaaggacagtgcaggcttctcaaagtaatctctgtactgttttaa 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 676 gtgctctggtggcagtaaggacagtgcaggcttctcaaagtaacctctgtactgttttaa 617
Query: 180 ctgggactctgtgtgtgtaaactgttctgtcaaagagtttttgtttttgtctttttaatg 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctgggactctgtgtgtgtgaactgttctgtcaaagagtttttgtttttgtctttttaatg 557
Query: 240 tattttttcaagtcaatatagttgtgatttttaagaacgaaccctgctgcaatgcatcag 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 556 tattttttcaagtcaatatagttgtgatttttaagaacgaactctgctgcaatgcatcag 497
Query: 300 tgttcaataaggagtgaggacttgcctggtcttgtagctcaggcagaagggtgtgtctgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgttcaataaggagtgaggacttgcctggtcttgtagctcaggcagaagggtgtgtctgt 437
Query: 360 gcatctcattatttgagagctctgtgaaccaaatagtgtcctgccacacagaccagtatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcatctcattatttgagagctctgtgaaccaaatagtgtcctgccacacagaccagtatt 377
Query: 420 gcttgtcattatctggaagacagtttagaaagaaaaatgcccaagactagaacaatgtcc 479
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 376 gcttgtcattatccggaagacagtttagaaagaaaaatgcccaagagtagaacaatgtcc 317
Query: 480 tgtggttctgaaaaagcaaaagttaatgtttgtttcctcaatactgagtattcatatggc 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 316 tgtggttctgaaaaagcaaaagttaatgtttatttcctcaatactgagtattcatatggc 257
Query: 540 ttgtttgcatcacaaaataaacactattcagtaagtcacattttaagttaataaag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgtttgcatcacaaaataaacactattcagtaagtcacattttaagttaataaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space: 576810
Effective search space used: 576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
