BAC Information

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BAC

Clone NameMSMg01-155C03
Chromosome13 (Build37)
Map Location 85,383,253 - 85,383,828
singlet/doubletsinglet
Overlap geneRasa1
Upstream geneTmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155C03.T7 (MSMg01no155_c03.b1)MSMg01-155C03.TJ (MSMg01no155_c03.g1)
ACCAG356234AG356235
length731741
length of high quality
(start - end)
580 (48 - 627)319 (77 - 395)
definitionCHROMAT_FILE: MSMg01no155_c03.b1 PHD_FILE: MSMg01no155_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:58 2005CHROMAT_FILE: MSMg01no155_c03.g1 PHD_FILE: MSMg01no155_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACGAGGATCCG
CGGAATTCTAATTGAGGTGGCGAATATTAGGTCAGTATTAAAAAGCAGGT
AAATACATTTTTAAAAATAGATCATACCAGCTTCCAAAAGAAGAAATAAC
ATGGTCAAAGTGAGCAAATGTTTCACCCTTTCTCCTTTCCAGTACAATGC
TGTCACTCTATATTACATATCACTGTATTAATATAATCACTTTCCTAAGC
AAGCAGTGAGACTCATTGTGAGCCTGAAACAAAGTTTTCTAGGAGTTGAG
AAGCAGAAACAAATCAGACATACAAAATGTATCAACTTGAGACAATAATC
CAATAACATAATGGCATTTGTAAGAAAAATCAGATGACTCCTAGAGAATT
ACATACAAATAGCTTGTACATAAATACTTGATTAAACAACAAGACATTTG
GGAGTTGAAAAGTTATTAACAATCATGTTTGACACTGTTTAAAGCATTCT
CATAAAAGACTATTACAATTATACCAGAAATTGAGGAAATCTGCATATTT
TGATTCCAACTATTTTCACCACAAGCTGTCGCTTAATTTACCTGGTATAA
TAGCGGCCTCCCATCATAAACTGGTTGTTAGGTGTTGGACAAATTTTAAA
TCGCTGAATATTTTCATTGGTCCGAAAATATTAGAATAAACTCCAGGAGT
ATTATCTGAGGGTCTCACAAGAAAGCTGTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAA
TTTATAGAGAGAAAGTGGGGAAAAGCCTGGAAGATATGGGCACAGGAGAA
AAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATCAA
CAAATAGGACCTCATAAAATTTCAAAGCTTCTGTAAGACAAAAGACACTG
TCTATAAGACAAAAAAAAAAGCCACCAACAGATTAGGAAAGGATCTTTAC
CAACTCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCA
AGAAGTTCTACTCCAGAATATCAAATAACTCTATTAAAAAATGGCGTACA
GATCTAAACAAAGAATTCTCAACTGATGAATACCAAATGCCTGATAAGCA
CCTGATCAAATGTCCAACATCCGTAATTATCAGTGAATTTCGAATCATAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGCCTAACATCACACTT
TCACGTGACAGCTTACGCTGTTTACGACGTGTTAGAAAGAGGCATTCTCC
TCCATTGTTGCTTGTACTGCAAGCTGGTATCACCATTCCTGAAATCAGTT
TTGATGTTCCACTTTCCTTCTTCTTAACATTGCCTTTTATCACTGTCCCC
AACGATTTCCTTATACCTTCTCCCTGGCCCCCTTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_c03.b1 MSMg01no155_c03.b1 CHROMAT_FILE:
MSMg01no155_c03.b1 PHD_FILE: MSMg01no155_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:58 2005
         (580 letters)



>mm_chr13_85383049_85384028
          Length = 980

 Score = 1060 bits (548), Expect = 0.0
 Identities = 569/576 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctaattgaggtggcgaatattaggtcagtattaaaaagcaggtaaatacatttt 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctaattgaggtggggaatattaggtcagtattaaaaagcaggtaaatacatttt 264

                                                                       
Query: 65  taaaaatagatcataccagcttccaaaagaagaaataacatggtcaaagtgagcaaatgt 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 taaaaatagatcataccagcttccaaaagaagaaataacacggtcaaagtgagcaaatgt 324

                                                                       
Query: 125 ttcaccctttctcctttccagtacaatgctgtcactctatattacatatcactgtattaa 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaccctttctcctttccagaacaatgctgtcactctatattacatatcactgtattaa 384

                                                                       
Query: 185 tataatcactttcctaagcaagcagtgagactcattgtgagcctgaaacaaagttttcta 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 tataatcactttcctaagcaagcagtgagactcactgtgagcctgaaacaaagttttcta 444

                                                                       
Query: 245 ggagttgagaagcagaaacaaatcagacatacaaaatgtatcaacttgagacaataatcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggagttgagaagcagaaacaaatcagacatacaaaatgtatcaacttgagacaataatcc 504

                                                                       
Query: 305 aataacataatggcatttgtaagaaaaatcagatgactcctagagaattacatacaaata 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataacataatggcatttgtaaaaaaaatcagatgactcctagagaattacatacaaata 564

                                                                       
Query: 365 gcttgtacataaatacttgattaaacaacaagacatttgggagttgaaaagttattaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttgtacataaatacttgattaaacaacaagacatttgggagttgaaaagttattaaca 624

                                                                       
Query: 425 atcatgtttgacactgtttaaagcattctcataaaagactattacaattataccagaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcatgtttgacactgtttaaagcattctcataaaagactattacaattataccagaaat 684

                                                                       
Query: 485 tgaggaaatctgcatattttgattccaactattttcaccacaagctgtcgcttaatttac 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaggaaatctgtatattttgattccaactattttcaccacaagctgtcgcttaatttac 744

                                               
Query: 545 ctggtataatagcggcctcccatcataaactggttg 580
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 745 ctgttataatagcggcctcccatcataaactggttg 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)