BAC Information

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BAC

Clone NameMSMg01-155D10
Chromosome13 (Build37)
Map Location 81,405,928 - 81,529,719
singlet/doubletdoublet
Overlap geneGpr98
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D10.T7 (MSMg01no155_d10.b1)MSMg01-155D10.TJ (MSMg01no155_d10.g1)
ACCAG356291AG356292
length717716
length of high quality
(start - end)
431 (64 - 494)461 (75 - 535)
definitionCHROMAT_FILE: MSMg01no155_d10.b1 PHD_FILE: MSMg01no155_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:04 2005CHROMAT_FILE: MSMg01no155_d10.g1 PHD_FILE: MSMg01no155_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,529,289 - 81,529,719)(81,405,928 - 81,406,388)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAATTGTAAACTATATATGAAAGACAAAGTGTAAAATACAGAGA
ACATTGATGATATTAATTATATTCTTGGTATATCTAGACTGCATTAAATT
GAATAAAGTGGATGGCTATTTCATAGTTAGAAACAGAGCGATACTGAAAA
GTATATAAGGCTCATGTATAAAAGTTGGTGTATATCGTATGCATATTTTA
TGAATCTTCACGTTAGGTAAGCTATTGAAAGGTTCAGTTGGGGCTCTTAT
GATTCATATTTACATATTCAGAGACTGAGGGCTATAGTCCTGCTCATGCT
GACAAAGTTCAAATGAGTAGTAGTTCGTGGTGAATCCCATGCTTAGCAAT
AGGCCTGCTTGATTCCATACTCCCTCCTGGCTACCAGGCTGTGTAGTCAC
AAGAGTGCAACAAAAACAAACTTACAGCTCAAATTTCATTACAGATCCAT
GCCAGGGTGTGGGGAAGCTGGGAGCCATCCCACATCTCTTTGTACCGAAC
TCCTTTAAAACCTTCTAATGGCTGCTAGGGACTGATATTTTCCTAATGGG
AAAATCACGGAAGAATCAGAAAACCCTCACACAACCCTCTTCTAGGACAT
CTTCCCTCTAGTTCTTACCATGCTTCCCAAATGTCCCCCTGAGATCATGC
CAGACAGTTCCATACTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAAAATTTGAATTTGTCTGGTGAT
GAAGAGGAAAGTTGTATGTGAATTAGGGAGAAAAGAAATTACAATATAAA
GGTTAGCCACTTTGGGTCTCTAACTATTAAAGCCACCTGTAGAGTTCGTG
GGCCTTTCACTTACTACTGTTAAGCTGCTGGCAGACAGCATTTTTTGTTT
GTTTGCTTGTTTGTTTGTTTGAGAAGGTAAGCATTTTACGAGAAGGTTCT
TTCAGACGTTCTTGTGTAGCTCTTCTCTGACAATCATTTTGGAAGCATCA
CGAGAGCTTCTTGGACCATGAGCTTTCCTGTTATGGTTCCCATCCATCAA
GGCTAAGAAGATAATGTAATAAATTACTAAAACCCTTCCCCAAACAAGTC
CTGCTTGCCAAGCAGTTCATAAAAGAAAGTAGCTGCCACCATGAGCCCTT
GACTCAAGATTCTATTATGTTTAACAAAGAATCATGCAGAAACTTTAAAA
ATTAACTTGTACCTCAAAATGTAATAGTAAGTGTGTTTATTGTAGTTTTG
GGGGCCCACCGACCAACAGGTATTTATGCTAGCGCTGGCTTTAAATTTCA
TCTTTTCTACCTTGTTGCTGTACGTGCGATAAGGATACCGCCCTAACCTG
GGACAGTGCTGACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d10.b1 MSMg01no155_d10.b1 CHROMAT_FILE:
MSMg01no155_d10.b1 PHD_FILE: MSMg01no155_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:04 2005
         (431 letters)



>mm_chr13_81529089_81529919
          Length = 831

 Score =  795 bits (411), Expect = 0.0
 Identities = 426/431 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactatatatgaaagacaaagtgtaaaatacagagaacattgatgatattaattatatt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaactatatatgaaagacaaggtgtaaaatacagagaacattgatgatattaattatatt 572

                                                                       
Query: 61  cttggtatatctagactgcattaaattgaataaagtggatggctatttcatagttagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cttggtatatctagactgcattaaattgaataaagtggatggctatttcatagttagaaa 512

                                                                       
Query: 121 cagagcgatactgaaaagtatataaggctcatgtataaaagttggtgtatatcgtatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagagcgatactgaaaagtatataaggctcatgtataaaagttggtgtatatcgtatgca 452

                                                                       
Query: 181 tattttatgaatcttcacgttaggtaagctattgaaaggttcagttggggctcttatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tattttatgaatcttcacgttaggtaagctattgaaaggttcagttggggctcttatgat 392

                                                                       
Query: 241 tcatatttacatattcagagactgagggctatagtcctgctcatgctgacaaagttcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcatatttacatattcagagactgagggctatagtcctgctcatgctgacaaagttcaaa 332

                                                                       
Query: 301 tgagtagtagttcgtggtgaatcccatgcttagcaataggcctgcttgattccatactcc 360
           ||||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 331 tgagtagtatttcatggtgaatctcatgcttagccataggcctgcttgattccatactcc 272

                                                                       
Query: 361 ctcctggctaccaggctgtgtagtcacaagagtgcaacaaaaacaaacttacagctcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctcctggctaccaggctgtgtagtcacaagagtgcaacaaaaacaaacttacagctcaaa 212

                      
Query: 421 tttcattacag 431
           |||||||||||
Sbjct: 211 tttcattacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_d10.g1 MSMg01no155_d10.g1 CHROMAT_FILE:
MSMg01no155_d10.g1 PHD_FILE: MSMg01no155_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:05 2005
         (461 letters)



>mm_chr13_81405728_81406588
          Length = 861

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaatttgaatttgtctggtgatgaagaggaaagttgtatgtgaattagggagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaatttgaatttgtctggtgatgaagaggaaagttgtatgtgaattagggagaaaa 260

                                                                       
Query: 61  gaaattacaatataaaggttagccactttgggtctctaactattaaagccacctgtagag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaattacaatataaaggttagccactttgggtctctaactattaaagccacctgtagag 320

                                                                       
Query: 121 ttcgtgggcctttcacttactactgttaagctgctggcagacagcattttttgtttgttt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgggcctttcacttactactgttaagctgctggcagacagcattttttgtttgttt 380

                                                                       
Query: 181 gcttgtttgtttgtttgagaaggtaagcattttacgagaaggttctttcagacgttcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgtttgtttgtttgagaaggtaagcattttacgagaaggttctttcagacgttcttg 440

                                                                       
Query: 241 tgtagctcttctctgacaatcattttggaagcatcacgagagcttcttggaccatgagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagctcttctctgacaatcattttggaagcatcacgagagcttcttggaccatgagct 500

                                                                       
Query: 301 ttcctgttatggttcccatccatcaaggctaagaagataatgtaataaattactaaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctgttatggttcccatccatcaaggctaagaagataatgtaataaattactaaaacc 560

                                                                       
Query: 361 cttccccaaacaagtcctgcttgccaagcagttcataaaagaaagtagctgccaccatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccccaaacaagtcctgcttgccaagcagttcataaaagaaagtagctgccaccatga 620

                                                    
Query: 421 gcccttgactcaagattctattatgtttaacaaagaatcat 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccttgactcaagattctattatgtttaacaaagaatcat 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)