Query= MSMg01no155_e22.b1 MSMg01no155_e22.b1 CHROMAT_FILE:
MSMg01no155_e22.b1 PHD_FILE: MSMg01no155_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:11 2005
(698 letters)
>mm_chr13_71295365_71296462
Length = 1098
Score = 1270 bits (657), Expect = 0.0
Identities = 688/704 (97%), Gaps = 11/704 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaaagatgtaatctttccaagattatataaatttgtcagttcccaatgcccaag 64
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 gaattcaaaagatgtaat-tttccaagattatataaaattgtcagttcccaatgcccaag 254
Query: 65 gatacactgaactacagagaaatcaagaagtcactggaagggaagtccgcacctctctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 gatacactgaactacagagaaatcaagaagtcactggaagggaagtccgcaccgctctgt 314
Query: 125 agggattgtccaaattacacagtcgatttcgtcattcctcagtgaagctcagaaaaaggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agggattgtccaaattacacagtcgatttcgtcattcctcagtgaagctcagaaaaaggg 374
Query: 185 gaagctatgcagggtgtgggagaaagggtcctcctgtcactgactgcaagctttgatctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaagctatgcagggtgtgggagaaagggtcctcctgtcactgactgcaagctttgatctt 434
Query: 245 gttcacctttatctatctgtctgtccatctgcctgtacctctctctctctctctctctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gttcacctttatctatctgtctgtccatctgcctgtacctctctctctctctctctctct 494
Query: 305 ctctct-t---------atctatttctcttcatcatcattatcatctatccatctgttgt 354
|||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctctctctctctctctcatctatttctcttcatcatcattatcatctatccatctgttgt 554
Query: 355 ctgttatctatcgtctgtctgtaatctatctaccatctatctatcctttatctactgatc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgttatctatcgtctgtctgtaatctatctaccatctatctatcctttatctactgatc 614
Query: 415 tatcatctaagatctctttgtctataatgtcctctactcaaaatgagagaccagagaaaa 474
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tatcagctaagatctctttgtctataatgtcctctactcaaaatgagagaccagagaaaa 674
Query: 475 ggatagaattttaatctgaaacaaacaacaacaaaaaaatgagtgtattcttccagttac 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggatagaattttaatctgaaacaaacaacaacaaaaaaatgagtgtattcttccagttac 734
Query: 535 agtaaagacaaaacacctgtcatgtatgtgtgcatgcttatactctatacatgaattgca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agtaaagacaaaacacctgtcatgtatgtgtgcatgcttatactctatacatgaattgca 794
Query: 595 cacacatgcacagtttcttcttgtgaaagcttaaganagtgtgtgcagtgtacaggccaa 654
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 795 cacacatgcacagtttcttcttgtgaaagcttaggaaagtgtgtgcagtgtacaggccaa 854
Query: 655 cccctcaccagcagtaatggcgattaatttacagatccccttca 698
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cccctcaccagcagtaatggcgattaatttacagatccccttca 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_e22.g1 MSMg01no155_e22.g1 CHROMAT_FILE:
MSMg01no155_e22.g1 PHD_FILE: MSMg01no155_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:11 2005
(655 letters)
>mm_chr13_71404645_71405699
Length = 1055
Score = 1205 bits (623), Expect = 0.0
Identities = 647/655 (98%)
Strand = Plus / Minus
Query: 1 ccagatgcagaaagttgaaaacagagggaaatcaagaaggaagagatcatgcggctaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ccagatgcagaaagttgaaaacagagggaaatcaagaaggaagagatcatgcggctaaac 796
Query: 61 tggaagccagggaatctgggttgggcaaagtcaggcttctacatcaccatcatgagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tggaagccagggaatctgggttgggcaaagtcaggcttctacatcaccatcatgagggag 736
Query: 121 ctaaggctgtaccaagagacatccctcaattctcttcacattctcagtctgttaagggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctaaggctgtaccaagagacatccctcaattctcttcacattctcagtctgttaagggct 676
Query: 181 ccacctctaataggtcctcctaaattctctgctacactgtgcaccacataaacaatgggt 240
|||||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct: 675 ccacctctaacaggtcctcctcaattctccgccacactgtgcaccacataaacaatgggt 616
Query: 241 gaggtatttgggacatcttcaccaagtcataggtcacagcatgctttcatgagacataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaggtatttgggacatcttcaccaagtcataggtcacagcatgctttcatgagacataaa 556
Query: 301 ggctccttatgacctgagtgtccttaaaattgaaagagataataaaagagaggtccaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggctccttatgacctgagtgtccttaaaattgaaagagataataaaagagaggtccaggc 496
Query: 361 caatgtgctgcagaaggtcttggtctcttgcccttgccttagagttggaggagccaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caatgtgctgcagaaggtcttggtctcttgcccttgccttagagttggaggagccaagaa 436
Query: 421 ccaagggaagaagcagatgtggaagtctgggaagcatggtgggtctttgctctacagtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccaagggaagaagcagatgtggaagtctgggaagcatggtgggtctttgctctacagtcc 376
Query: 481 tagccctgcttaagcattggtgcaggtatctgaagtttgcaatagctggctggctaactg 540
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct: 375 tagccctgcttaagcattggtgcaggtatctgaagattgcaaaagctggctggctcactg 316
Query: 541 cttaaagagctccagtgtattgtagtcacagccaaagtctgacaacaatgtgggaacata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttaaagagctccagtgtattgtagtcacagccaaagtctgacaacaatgtgggaacata 256
Query: 601 gcaagccgcagaccatgtgaatcttctgcacatgcacgtcttgctgtgaaagttg 655
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 gcaagccgcagaccatgtgaatcttctgcacatgcacatcttgctgtgaaagttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
