BAC Information

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BAC

Clone NameMSMg01-155J23
Chromosome13 (Build37)
Map Location 57,226,308 - 57,226,553
singlet/doubletsinglet
Overlap genenone
Upstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
Downstream geneLOC100040995, Spock1, Klhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J23.T7 (MSMg01no155_j23.b1)MSMg01-155J23.TJ (MSMg01no155_j23.g1)
ACCAG356581AG356582
length724721
length of high quality
(start - end)
533 (70 - 602)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no155_j23.b1 PHD_FILE: MSMg01no155_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:34 2005CHROMAT_FILE: MSMg01no155_j23.g1 PHD_FILE: MSMg01no155_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAAACTAAATGGCTGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGTAATTGCAAATCAAAACAACCCTGAGATTC
CACCTTACACCAGTCAGGATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTCCAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATCCTGCAGTACCTCTTCTGGGCAT
ATATCCAGAAGATGTTCCAACTGGTAAGAAGGACAGACACATGCTCCACC
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAATAGAGGAACGGATATAGAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
ATATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAATCTAATTACC
AAAGAACCTCCACCATATGTACTCACTGATAAGTAGATATTAGTCCAGAA
ACTTAGAATACCCCAGATATAAGACACCATTTGCCTAACCACCTGACAGC
CAAGAAGAACGACGACCACAGTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXCGCGTTTTACTTGGAGGTGN
AANTATACAAGGTAACGCCCACACTCTTCTTGGAGGAAAAAAAAATGACA
TAAAACCTTCTGCCAGAGTTCTTTCCTGTTTTAATATCATAAATGGAGAT
AAAGCTTTTGAAAGGATGCGAGAAGGAGCTTTTCCAAACAACCCTGCAAA
TCCTCCTGCAAATATCTCTGGTAGCTCTTCTGGATTTCTCTTTTTCTTTT
TGATTTTAAGACAGGGATTTCTCTGTGTAACAGAGGACTGGCTACCCTGG
AACTTGCACCGTAGACCTTGAATCNTTAGAGATCTGCTTCTGCCGCCCAC
ATACTGGAATTAAAAGTAGGCACCACCAACCCCTGCTTCTTGTTAACTTC
TTAATTGGTTCCACATGGGGACAGTCCTATTGTCTGGGTTTGCCTCACAG
CACATGACAAGCTGTGTGGTAGTTCTTCATTGCTTTGATTCAAAAACTGA
CAAATAAACAAAAGCTACAAATGACCTTGTTTTCTTACTGCGTTGCTACT
TGCGGGGTGAAAAGGAACATCCTGAGGTAGGATGCGCGGGGTGTCCATAT
ACCCCCTATTACCACTCCTAACTCTCCCCCCTCCCTAACCCACACCTCTT
TTTTTTTTTTTTCTTCAACGAGCCACCTCATCTTTCCCCCGAAAACCACC
TCTACTCTTCACCTCTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j23.g1 MSMg01no155_j23.g1 CHROMAT_FILE:
MSMg01no155_j23.g1 PHD_FILE: MSMg01no155_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:34 2005
         (244 letters)



>mm_chr13_57226173_57226818
          Length = 646

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcttgg-agg-aaaaaaaaatgacataaaaccttctgccagagttctttcctgtttt 58
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttcttggcaggaaaaaaaaaatgacataaaaccttctgccagagttctttcctgtttt 322

                                                                       
Query: 59  aatatcataaatggagataaagcttttgaaaggatgcgagaaggagcttttccaaacaac 118
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 321 aatatcataaatggagataaagcttttgaaaggctgtgagaaggagcttttccaaacaac 262

                                                                       
Query: 119 cctgcaaatcctcctgcaaatatctctggtagctcttctggatttctctttttctttttg 178
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcaaatcctcctgcaaagctctctggtagctcttctggatttctctttttctttttg 202

                                                                       
Query: 179 attttaagacagggatttctctgtgtaacagaggactggctaccctggaacttgcaccgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttaagacagggatttctctgtgtaacagaggactggctaccctggaacttgcaccgt 142

                 
Query: 239 agacct 244
           ||||||
Sbjct: 141 agacct 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space:   149695
Effective search space used:   149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)