BAC Information

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BAC

Clone NameMSMg01-156A03
Chromosome13 (Build37)
Map Location 89,568,054 - 89,568,421
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156A03.T7 (MSMg01no156_a03.b1)MSMg01-156A03.TJ (MSMg01no156_a03.g1)
ACCAG356859AG356860
length680785
length of high quality
(start - end)
---370 (77 - 446)
definitionCHROMAT_FILE: MSMg01no156_a03.b1 PHD_FILE: MSMg01no156_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:02 2005CHROMAT_FILE: MSMg01no156_a03.g1 PHD_FILE: MSMg01no156_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTACTATCCCAGTCCAATATTTTTACAACATCTTNGTTTTTTTTTTT
ATTTTTTATCTATTTAACTTTTTATACTCACTTCACCCACCCCCATCCCC
CCCCCCTCTCCCCGCTCCTNTGTTTCTCCCCTCCTCCATACTACGTGNTT
ATAACCCTCTTTTACTGTTTATTTCCATACATAACCAACTCCCCCTCTCT
TCTTCCTCTCTCACCCCACCATCCCTCCTTACCTTATTTACCTTTCTCCT
CCCCGCTTTTTATCTTTTTTCACTCCTTCCCCTCTCTCCCTTTATTTTTT
TCTTGACTTTATTCTTAAATATAATATTCTCCTTCTCCCACCCCCTCTCT
CTTCCCCNNNAAAANNTCGCNNNNNCCCTCTCTTTAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGGAATTCTGTAAACTTCGCGTGG
GGGGTGGGNAAAATTAACAAAGAATCTCAAGTTCTTTATTCCCTGTTTGC
CCACTGCAATATGTGGTGCTTTTTGTGACCTCCCCAGGAACCTATTTCTT
CCCGGGGGTAAGGAGAAAATTTTTTTTTTGGTTTGGGGGCCCAAACCAAA
AGCCCCCCAGTGTGGTGTGGGTGGCCCCCAAAAAAAAATCCCCCCTGGAA
CCCTTTTTTAAACACCTCTTTCCCTTTTTT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAATACACCTAGCATGAAAAT
AACCTCTCTTTAGTCGGTAGCCCGTGTGTGGCAGGGCCTTTCTCAACCCA
GCACTTTCCTCTTTGTAGGACTTCAGAGGGAAGGTGGGGGCTGAGGTTAC
AGGGTTCTCAGAAACATCTGCTTCACAAAGCAGCGATTCTTTTCAGTTGA
ACGACTTTGAGCCGATTAATTTCATTTTCCTCAAACATCTATCAGTGCTT
TGTAACTTGTGAGCAAACGAATGGAAACAGAAAGTCATTTTTAAGTTAAT
TTTATATTTTGGCTCAGGATTGGAAAACAGCCTCTGCTTACACACCAGCT
ATAGCCTGTGGCACAGAAACCGGGTCTGCTCTTCCAGCACTGAGCAGTGC
CTTTCAGTTAACAGGCATGGGGTGAGAGAGAGACAGAGGAAGGAAAAGGC
AGCTTCGGTTTGCAGGTAATTCTCAGTGTCCCCTCCCAGAAGCTCAACTT
ACTCCCTCCTCCTTTAGGAATTTTCCCTTTTCCCATGGGGGGGGCAAGGG
ACCCTCTGTAAATACACTATTTTTTGAAACAACATACTCTCTTACTCCTC
CTCACCCTCTTTCATCTTCATGTTCTACCTCTACAGTTATTAATCCCGAC
CCACTTTATATTCTATATTTATTGATTATCTTTCTACTATCTACATTTTT
TTTCGCTTATTTTTTATGTCTCATTAATTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_a03.g1 MSMg01no156_a03.g1 CHROMAT_FILE:
MSMg01no156_a03.g1 PHD_FILE: MSMg01no156_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:02 2005
         (370 letters)



>mm_chr13_89567854_89568621
          Length = 768

 Score =  688 bits (356), Expect = 0.0
 Identities = 366/370 (98%), Gaps = 2/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaatacacctagcatgaaaataacctctctttagtcggtagcccgtgtgtggcaggg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 568 actgaatacacctagcatgaaaataacctttctttagtcggtagcccgtgtgtggcaggg 509

                                                                       
Query: 61  cctttctcaacccagcactttcctctttgtaggacttcagagggaaggtgggggctgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cctttctcaacccagcactttcctctttgtaggacttcagagggaaggtgggggctgagg 449

                                                                       
Query: 121 ttacagggttctcagaaacatctgcttcacaaagcagcgattcttttcagttgaacgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttacagggttctcagaaacatctgcttcacaaagcagcgattcttttcagttgaacgact 389

                                                                       
Query: 181 ttgagccgattaatttcattttcctcaaacatctatcagtgctttgtaacttgtgagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttgagccgattaatttcattttcctcaaacatctatcagtgctttgtaacttgtgagcaa 329

                                                                       
Query: 241 acgaatggaaacagaaagtcatttttaagttaattttatattttggctcaggattggaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 328 acgaatggaaacagaaagtcatttttaagttaattttatattttggttcaggattggaaa 269

                                                                       
Query: 301 acagcctctgcttacacaccagctatagcctgtggcacagaaaccgggtctgctcttcca 360
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acagcctctgct--cacaccagctatagcctgtggcacagaaaccgggtctgctcttcca 211

                     
Query: 361 gcactgagca 370
           ||||||||||
Sbjct: 210 gcactgagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 768
Length adjustment: 9
Effective length of query: 361
Effective length of database: 759
Effective search space:   273999
Effective search space used:   273999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)