BAC Information

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BAC

Clone NameMSMg01-156B02
Chromosome13 (Build37)
Map Location 16,602,564 - 16,603,099
singlet/doubletsinglet
Overlap genenone
Upstream geneGli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156B02.T7 (MSMg01no156_b02.b1)MSMg01-156B02.TJ (MSMg01no156_b02.g1)
ACCAG356903AG356904
length707711
length of high quality
(start - end)
315 (46 - 360)536 (77 - 612)
definitionCHROMAT_FILE: MSMg01no156_b02.b1 PHD_FILE: MSMg01no156_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:06 2005CHROMAT_FILE: MSMg01no156_b02.g1 PHD_FILE: MSMg01no156_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTTCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTA
CAACTTCTTTTAGATATAAAATTTGTAGTACTATATCTGTCCCAAATCAG
TGCATAACAAATTTTTTTCCGACCTCACCCCCAACTTAGAAAAACCCCTC
AAGTGATGCTTTTTAGCTTACATTGCACATTAACAAATTATATGTAATTT
TCAATCAATCAGTGATATCCATTTCAAAATGAAATTACTAATGCTGAATT
CTCTTCAGTTTCCACAGCCATTTGTCACTGGGTCAATAAAAAACACACAT
TGAATTTAAATCTCACTGTAAAGGGGTGTGTATGTGTGTGTGTGTGTGAG
TGTGTACCTCTATATTACCCTTTTTTGTTCCCCTCTTCCTCCAATTTTTC
CTTCCAGAACCCCCGGGGCCCATATTTACCCCCTTACCCGCTTTCTATTT
CCTATTT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCAAAATAAACAACCCAGTTA
CACTGAGTTGGACAGTCAGCAAGTCCCTCATTTTGTGGTTTGACCCTCAT
GTGTACATCAATCACAGCAAATTTCTTTCTCTTTCCATCCCAAGAAAATC
AGCACTTCCCACACAACATGCCATTACCATCACAATAGAATCTGCACAAG
GACAGAGGTTGGATCCAGTCCTTAACTTTAAAACCCCATTTGAAATCACA
GCTTCCTTCCTGTGGCAACTTAGCTTTAAATCAGACTTCCACTGATATTG
GCAAATAACTCGTCATTTTTCCTTCATGTTCTGGTTCCATCCCCTTGCAA
GACTGTTTGGAAGCCATAGCCCTCTAACGTTTACCATAATTTTTCTGTTT
TATCCTGCCTGAGACCTGCACAAGATCAAGCCCACCAAAATCCTAGTACA
GATGAGGTAGATGATCCCCAGGCCATGATCCACACTGAGGAACTGTGGAC
AATAGATGCTTGCTGCAGGGAGGGAGATTAATTCTGTATTGAGCATGCAG
GCACTGGTTGGTTTCCCATGACCCAGTGGATGATTCCACATCCACAAATG
TATTGCCAGGACTAATTTGTCAAAAACAAAACAAAATGCCTCTTAAATAG
GAGAAAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_b02.g1 MSMg01no156_b02.g1 CHROMAT_FILE:
MSMg01no156_b02.g1 PHD_FILE: MSMg01no156_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:06 2005
         (536 letters)



>mm_chr13_16602364_16603299
          Length = 936

 Score =  967 bits (500), Expect = 0.0
 Identities = 527/536 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcaaaataaacaacccagttacactgagttggacagtcagcaagtccctcattttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ttagcaaaataaacaacccagttacactgagttggacagtcagcaagtcagtcattttgt 260

                                                                       
Query: 61  ggtttgaccctcatgtgtacatcaatcacagcaaatttctttctctttccatcccaagaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ggtttgaccctcatgtgtacatcaatcacagcaaatttctttctctctccatcccaagaa 320

                                                                       
Query: 121 aatcagcacttcccacacaacatgccattaccatcacaatagaatctgcacaaggacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aatcagcacttcccacacaacatgccattaccatcacaatagaatctgcgcaaggacaga 380

                                                                       
Query: 181 ggttggatccagtccttaactttaaaaccccatttgaaatcacagcttccttcctgtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttggatccagtccttaactttaaaaccccatttgaaatcacagcttccttcctgtggc 440

                                                                       
Query: 241 aacttagctttaaatcagacttccactgatattggcaaataactcgtcatttttccttca 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttagctttaaaacagacttccactgatattggcaaataactcgtcatttttccttca 500

                                                                       
Query: 301 tgttctggttccatccccttgcaagactgtttggaagccatagccctctaacgtttacca 360
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 501 tgttctggttccatccccttgcaagactgtttggaagccatagttttctaacgtttacca 560

                                                                       
Query: 361 taatttttctgttttatcctgcctgagacctgcacaagatcaagcccaccaaaatcctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatttttctgttttatcctgcctgagacctgcacaagatcaagcccaccaaaatcctag 620

                                                                       
Query: 421 tacagatgaggtagatgatccccaggccatgatccacactgaggaactgtggacaataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacagatgaggtagatgatccccaggccatgatccacactgaggaactgtggacaataga 680

                                                                   
Query: 481 tgcttgctgcagggagggagattaattctgtattgagcatgcaggcactggttggt 536
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 tgcttgctgcagggagggagattaattctgtattgagcatgcagccactggttggt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)