BAC Information

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BAC

Clone NameMSMg01-156M10
Chromosome13 (Build37)
Map Location 89,519,385 - 89,519,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156M10.T7 (MSMg01no156_m10.b1)MSMg01-156M10.TJ (MSMg01no156_m10.g1)
ACCAG357429AG357430
length759828
length of high quality
(start - end)
316 (23 - 338)---
definitionCHROMAT_FILE: MSMg01no156_m10.b1 PHD_FILE: MSMg01no156_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:59 2005CHROMAT_FILE: MSMg01no156_m10.g1 PHD_FILE: MSMg01no156_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCAAGAGCTTCCTTACA
ACGGCTGCAAATCTTTAAAAGTAACAGTCATATATATAGGCACACCACTG
AACACACACAGAGATGCCCACACACAAACACACACACACACACACACACA
CACACACACACACACACACACACAGACAGACATCTGATTTGTTTATCAGC
ATCACTTCTGAAAATGCCTAAAAGGACAATTGAGAATTTATGGAAGTTAT
ATCAATAAGATGCAGGATAAATTCTTTTTTCAATAAAAGGGAAAAATCGT
TCATAAAAATGTAAAGAAAGAGATATATTTATATTTTGTTATTTATAACC
CCCCCCCGCTATTCTGATGTACCTACCTTTATATGTGATTGGCCCTCGCC
TGATTCAATTTCTTTCTTTTGTTTGATTGATTGTTTTTTGCTATGACTTG
TTTGTACCTTTACTGACTTAATTCATATAAAACCCATTTATATTCATCTT
TCGCATCTCATTATGTAATAATTCATATAATTAAATTTACTAATATTCTC
TTTCCTTTTTTTCTATATTAACTATTTCATATACCATTATTTTTATATAA
ATATTATAATTTTCTATCCATATCACCCATTTCCTTTTATTCACTCTATT
TTACAATATTCAAACATTTCTAATTTTGTTTATTATATTCTATCTTAATT
TTCACCCTATCTTAATCTTATATAATTATACACTATTACTAATTCTTCTA
CTATTAGTN
TTAGGTTGCAGTGATTAAGGGTTTCTCTCCTTTATTCTATCATTTNNNTA
TAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACTTCAAAGAATT
TTCCTGGTAACACTATTAGTTTCAAAGTTACTTAAATATCATTTTTTCCG
GAAACAACTAACCATTAAATACGGCAGGGTAAAACGGCAATTCACCAATT
TTGGTTAATCCAATTGTATGGGGCAAGGATAATAGTGGGAAAGAAAATTA
TTATTTTAAAAATAGTGAAGAAGGAGAATATGGAAAAAACTTGGCCTAAG
GTTTCTACAAAGCTTCCCCATTATCTTTTCCAAGAGGAAACCTATCCTCA
AATTTCACAGTTTTTTTTTTTCCCCCCCGCCCCCCGCCATGAGTTAAAAT
GGTTGGAGTTCCTCTACAACCAATAGCCGGAAACCTAAATCAGTTGGAAT
GGAGAACTCTTGATGAAACGGAGGAATTTTGAAGCCTTGATTATAAATCT
TTCTTCCTTTTCCAAAACCGGGGGGTTGCCTCCTAAAATGTCAGTTTTAA
ATTATTTTTTAACCAACTAATTGTTTGAGTTGGAAACTTTCGCACTTGGA
ACAAGAGAAAAGGGTCTGATCCAAGAGTTCAAAAATATCTGGTTTGCCGG
TTAATAATTTGCCAATCATATTTAACTGTATTTTTCCAGTTACAAAATTG
CATAAAAAGAAAATCTTTATAAACAATATAACTTTTATTATATATATTTA
AGTATTTTTCTCGTTTCCTAATATTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_m10.b1 MSMg01no156_m10.b1 CHROMAT_FILE:
MSMg01no156_m10.b1 PHD_FILE: MSMg01no156_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:59 2005
         (316 letters)



>mm_chr13_89519025_89519740
          Length = 716

 Score =  530 bits (274), Expect = e-155
 Identities = 300/312 (96%), Gaps = 6/312 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaagagcttccttacaacggctgcaaatctttaaaagtaacagtcatatata 64
           ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct: 666 gaatttctcaagagcttccttacaagggctgcaagtctttaaaagtaacagtcatatgta 607

                                                                       
Query: 65  taggcacaccactgaacacacacagagatgcccacacacaaacacacacacacacacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taggcacaccactgaacacacacagagatgcccacacacaaacacacacacacacacaca 547

                                                                       
Query: 125 cacacacacacacacacacacacacacagacagacatctgatttgtttatcagcatcact 184
           |||||||||||||||||||||||      |||||||||||||||||||||||||||||||
Sbjct: 546 cacacacacacacacacacacac------acagacatctgatttgtttatcagcatcact 493

                                                                       
Query: 185 tctgaaaatgcctaaaaggacaattgagaatttatggaagttatatcaataagatgcagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 492 tctgaaaatgcctaaaaggacaattgagaatttatggaagttatatcaataagatacagg 433

                                                                       
Query: 245 ataaattcttttttcaataaaagggaaaaatcgttcataaaaatgtaaagaaagagatat 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ataaattctattttcaataaaagggaaaaatcgttcataaaaatgtaaagaaagagatat 373

                       
Query: 305 atttatattttg 316
           ||||||||||||
Sbjct: 372 atttatattttg 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)