BAC Information

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BAC

Clone NameMSMg01-156P01
Chromosome13 (Build37)
Map Location 104,875,395 - 104,875,679
singlet/doubletsinglet
Overlap geneNln
Upstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik
Downstream geneSgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P01.T7 (MSMg01no156_p01.b1)MSMg01-156P01.TJ (MSMg01no156_p01.g1)
ACCAG357551AG357552
length722726
length of high quality
(start - end)
321 (46 - 366)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no156_p01.b1 PHD_FILE: MSMg01no156_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:11 2005CHROMAT_FILE: MSMg01no156_p01.g1 PHD_FILE: MSMg01no156_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTAGCCTAGGCTATAGAACACCCTGTCTCCAAGTTAGCAACAA
GGAATGTTCCTTCTATCTGTGAAATTGTGAAGATATTTACAGTAGTTTTG
TTATCCCACCCTAAACAGCAAAGGTTACAGCCACTGGAGCTGGGGCTAGT
CACCTAGTAGACTACCTGCCTGGCAGTAGAGGCCCTCAAAGCCGGTATTT
ACCACTAAAAAAAAAAATTAAATTAAAAAAAAGTTACAACCACACTATGT
GGCAAGTGCTTAGTTAAGACGGAAAAGGCATACAATTACAGGGCTTGGTA
CTATCTGTGGTTACTGGCATCCACTCCACTAGGGCAGGTGCTGAAAACAA
GCATGAAATGTATCTCCCCCCACACGGAGTTTCTTAAACAAGGATTAGAA
TTGTATCTGAGCAGTCAGTCAGATTGTAGACAAAATTATAGTAGGATGTG
CTGGAGCTCCGATGTAGCTATTTGTCCTGTGGGAAAGCTGGCAAGCCAGC
AGGATGCTGGACAGAGGAAGGCATCTCCTGAAGAGCAGGACACACCTGTA
CCAAGAAGCCAAGCGATCCACATGTCCTGAAGCTGAACACACTAATACAG
CCCTCCTCCTCTAATAAGTACCAAGGCAAGAACAGCAAGTATTCATGTGC
TGCGAAGACAGATAGATTAATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAACTGGGCTGAGACAGTCATG
GAAGCTTTACTACACAGGAGGAAGTCTGAGCTGAGATCTGTAAAGTAAGA
GATGGAAGTGAAGAAAGCAGTGAACAGTAGTTATCCAAGGAAAGGGGGGA
ATGCCGGAAGGCCTGGGAAGAGTCGGAGAGTGAGGAAGATGTAAAAGGCA
TGTCTGCAATATGGACTTCAGTACAGCGGGTACCAAGAAAGCAGAGAGAT
GCATGGGTGCAAGCAGCTCCAGAAAGGCCATGTGTGTTAACCTGGGCACC
TGGCACCTGACCTCTTTTTCCCTCGCCCCCCCCCCCCACTGAAGGGGGTG
CTGTGATCAGGTTTTTACATTCCACGACGCTCCCTTGAAGGCAGTCTGGA
GAGTCAATCTAAAGACCCCAGCCTCTGCCTCTGACTGAGAACTGAGCGCA
CAGTAAGGATTGCCACTGGTATGTAGACTAAGGGTCTGTTGTAGCATATA
GAAGTAAGATGTACATTATCTATCTTAGGGCATCCTGACTTGAGGTGGTC
ATTAACATTGCAGTTGAGCTAAGCATTAGTTAGAGACACAAGTCTAGAAT
TCCCGGGATGTTTACCGAGGCACAGAGGCGTGAACCTACGACCCTGTGTG
TCCCGTGTAGTCTTTCATTTGCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p01.g1 MSMg01no156_p01.g1 CHROMAT_FILE:
MSMg01no156_p01.g1 PHD_FILE: MSMg01no156_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:11 2005
         (288 letters)



>mm_chr13_104875195_104875881
          Length = 687

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaactgggctgagacagtcatggaagctttactacacaggaggaagtctgagctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgaactgggctgagacagtcatggaagctttactacacaggaggaagtctgagctgaga 426

                                                                       
Query: 61  tctgtaaagtaagagatggaagtgaagaaagcagtgaacagtagttatccaaggaaaggg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tctgtaacgtaagagatggaagtgaagaaagcagtgaacagtagttatccaaggaaaggg 366

                                                                       
Query: 121 gggaatgccggaaggcctgggaagagtcggagagtgaggaagatgtaaaaggcatgtctg 180
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 365 gggaatgccggaaggcctggg-agagtcagagagtgaggaagatgtaaaaggcatgtctg 307

                                                                       
Query: 181 caatatggacttcagtacagcgggtaccaagaaagcagagagatgcatgggtgcaagcag 240
           ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct: 306 caatatggacttcagtatagtgggtaccgagaaagcagagagatgcatgggtgcaagcag 247

                                                         
Query: 241 ctccagaaaggccatgtgtgttaacctgggcacctggcacctgacc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctccagaaaggccatgtgtgttaacctgggcacctggcacctgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)