BAC Information

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BAC

Clone NameMSMg01-157C19
Chromosome13 (Build37)
Map Location 37,538,924 - 37,539,560
singlet/doubletsinglet
Overlap genenone
Upstream geneFars2, LOC666758, Nrn1, F13a1, Ly86, LOC100042794
Downstream geneLOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157C19.T7 (MSMg01no157_c19.b1)MSMg01-157C19.TJ (MSMg01no157_c19.g1)
ACCAG357726AG357727
length752751
length of high quality
(start - end)
380 (373 - 752)639 (113 - 751)
definitionCHROMAT_FILE: MSMg01no157_c19.b1 PHD_FILE: MSMg01no157_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:28 2005CHROMAT_FILE: MSMg01no157_c19.g1 PHD_FILE: MSMg01no157_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTCCATGTAC
CAATAAAGCAAGTTTCCCATGAACACCAGACTGGCTCACCTGGAGGCTGT
CCACAGGTTGACCCTTTCAGCCTCAAGGACTCTCTCCTCCTCCCAGTGTC
CCCCATAAAGTCCTCGTTGTGTACTGTCCTTCTTATCTACTGGCTCTAAA
TCAGAGATTCACAATCCCTTCCTTGAGTTCTACTAATGTGCTCCTCAAGG
AAACCAGGGAGACGTATTTACCCATCTATTCTAGAAGATGTTGGAAAGTC
TACAGATGAGCAATCAGACACTGGAGATGCATAGACAGTTGTGTGGATCA
GGTATTTCCTTGCGCCCCCCACCATCCAGAAACTTCCACAAGATCAGCTA
TCCAGAGGACATCACCATCAAACTTGGCTTTGGCGTTTGGTGATATCACT
AGCCTTTGGTGATCCACCTTCCTCTGGCTCCTTTTCTTTCTCTGGAGTGA
AAAGTTGGGGCTTAAAGTGCTCATAATATTCCTGTGTTGATCTTGCTGGT
AAAATTAAGCTAAACCATTCATCAGCCATCTTAAAAATACAGAGGCTTCC
AGCCTTCAGTTATCTACTCTCATAGAAAACATATTCATCACCCTTGAGAG
TCTGAGAGTTTTGGGAGCTGTGTAAAGAGACAAGGACAAGGACCAGCTAT
CTGTTTTACAACATCATGGGCAGAAAGAGGAATGACCCCTTTTATAGGGA
AG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATAGCCACAATATGAGCAGGACATTAGCCATGATTCTATCTG
GTGCGTGGCTTCGGGCATTCACTCTTATGTCGGGGGAGGGGAGCATAATG
ACACTTAAGAGCTTCACTGACCACTAATCTAGGGATTGACTGGCTTTTCT
GGTGTCCTGAGCAAATGTCCAACCTTTCCCTTCTGAGTGACGATTATCAT
AGGCCCGCCTGCGTTCTCTACAAGGTGATCCACTGAAGCCCCCACTCCCT
GGGACCCGTGAATGGGACTTTACTTGAGAGCAGGTCTTTGCAGCTCTAAG
TGAAGAGAAGGTCATCAGGGAGAATCGTGTTTCAGTTTGACTTGTGTCCT
TGCAAACTGGTTAAATATGGGCAGGAAGCCACGTGGGCTGCACGAGGCAA
GTCCTGAGTGGGCATTTTACAGAGAATGGAAAACATGGGCCCGTCTTCTT
TCCAGGGCCAAGGCACAAATGCGCGCTATGACCTTTTTACCCAGGACTTT
CAGATAAACATTCTTAGCATCGTCTAGTGCTGGTGGTCTCCAAATGAAAT
GTTACTTTCAAGGAGAAGCTAGGTCTCTTGTCTGGTCGCGCCTCCAAAAA
ACCTCATTGTTGAGAATCCTACGGCGTTTTCCAAGGCTTAACTGGCTGCT
ATGTTTAAAGAGTATATTCCATGACTTCCAGGTATTCTGTTAGGACTTTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_c19.g1 MSMg01no157_c19.g1 CHROMAT_FILE:
MSMg01no157_c19.g1 PHD_FILE: MSMg01no157_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:28 2005
         (639 letters)



>mm_chr13_37538724_37539760
          Length = 1037

 Score = 1131 bits (585), Expect = 0.0
 Identities = 626/641 (97%), Gaps = 6/641 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggcattcactcttatgtcgggggaggggagcataatgacacttaagagcttcactgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gggcattcactcttatgtcgggggaggggagcataatgacacttaagagcttcactgacc 778

                                                                       
Query: 61  actaatctagggattgactggcttttctggtgtcctgagcaaatgtccaacctttccctt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 777 actaatctagggattgactggtttttctggtgtcctgagcaaatgtccaacctttccctt 718

                                                                       
Query: 121 ctgagtgacgattatcataggcccgcctgcgttctctacaaggtgatccactgaagcccc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 717 ctgagtgacgattatcataggcctgcctgcgttctctacaaggtgatccactgaagcccc 658

                                                                       
Query: 181 cactccctgggacccgtgaatgggactttacttgagagcaggtctttgcagctctaagtg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 657 cactccctgggacccgtgaatgggactttacttgagagca-gtctttgcagctctaagtg 599

                                                                       
Query: 241 aagagaaggtcatcagggagaatcgtgtttcagtttgacttgtgtccttgcaaactggtt 300
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 598 aagagaaggtcatcagggagaatcgtgtttcagattgacttgtgtccttgcaaaatggtt 539

                                                                       
Query: 301 aaatatgggcaggaagccacgtgggctgcacgaggcaagtcctgagtgggcattttacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaatatgggcaggaagccacgtgggctgcacgaggcaagtcctgagtgggcattttacag 479

                                                                       
Query: 361 agaatggaaaacatgggcccgtcttctttccagggccaaggcacaaatgcgcgctatgac 420
           |||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||
Sbjct: 478 agaatggaaaacatgggcacgtcttctttccagggccaaggcacaaat--gcgctatgac 421

                                                                       
Query: 421 ctttttacccaggactttcagataaacattcttagcatcgtctagtgctggtggtctcca 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 420 ctttttacccaggactttcagataaacattcttagcatcgtctagagctggtggtctcca 361

                                                                       
Query: 481 aatgaaatgttactttcaaggagaagctaggtctcttgtctggtcgcgcctcc--aaaaa 538
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||
Sbjct: 360 aatgaaatgttactttcaaggagaagctaggtctcttgtctggtcccgcctccaaaaaaa 301

                                                                       
Query: 539 acctcattgttgagaatcctacggcgttttccaaggcttaactggctgctatgtttaaag 598
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 300 aactcattgttgagaatcctacggc-ttttccaaggcttaactggctgctatgtttaaag 242

                                                    
Query: 599 agtatattccatgacttccaggtattctgttaggactttat 639
           ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 241 agtatattccatgacttccgggtattctgttaggactttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1037
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1027
Effective search space:   645983
Effective search space used:   645983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)