BAC Information

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BAC

Clone NameMSMg01-157F16
Chromosome13 (Build37)
Map Location 109,374,512 - 109,546,389
singlet/doubletdoublet
Overlap genePde4d, EG668144, LOC621663
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157F16.T7 (MSMg01no157_f16.b1)MSMg01-157F16.TJ (MSMg01no157_f16.g1)
ACCAG357855AG357856
length737736
length of high quality
(start - end)		313 (39 - 351)284 (68 - 351)
definitionCHROMAT_FILE: MSMg01no157_f16.b1 PHD_FILE: MSMg01no157_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:40 2005CHROMAT_FILE: MSMg01no157_f16.g1 PHD_FILE: MSMg01no157_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,546,080 - 109,546,389)(109,374,512 - 109,374,800)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCAGAGGATGGCCCGTGCTCCACACTGGCCTGTTTCTACGACTTGATCAG
AAAGCCTTAGCTGCTGAGACAGAACTTATCCTCTTTCTGCCCCATCCCCT
TGTTGTTTTACAAGCCAAAGAGCTCAAGCACACAATAATTGCCAGGAATC
ACCATATGTGGTAGTACCACGTCCCTCAAGGCTGAACTCCAGCCAAGGTG
CCCCATTTCCTCCTCAAGATGTTGTGGGGCCAGCAGCCTCTCTGACAAAT
GTGTCAATAAAGATACAACCCTATTCATGTGAGTGAGCAGATATTTACTA
GTTGAGTCCATGCCCNAAGCGNAACCGGCTCCCTCCAGGAAGAGAAGACA
TCTTGGGACACCCACACATAAAAAGAAAGTTGAAGGATCATTTGTTTCAT
GTGGCAAGTGCCTGTCCTGAATATAGTCCTATCATTTGTGAGCTCAGGGG
AAAACAGTGAGAGGAAAAAAAAAAAAAAAAAAAAACAACCGAATACTGAA
GTTTCCTCTTGCTAGGAGTACAAATGGCTGGCTCTCCCACTGCAAGTTAT
TGGAAAGCCCTGTGAAAGCAGACTCTTGAAAACCATAAAGTACATACAAA
AGGTGCTTTTTATGATATTTTTATAAAGAAGGAAAGCCTTGTCGTTCTAT
ATTCTGTAAACCCAACATTATTTTTCAAGCAAAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCAGTGACAGAGCACTGAGTGTTATAAGGTG
GAAATATTTCTTCCTATCTATTTTCCCCTATTGTCCCAGTGTCTTGGCTG
ATTTACTGGTGACGTGGAAACAGTGGTGAGTGAGGTCACTTGCCTAGAGA
TATGTTGAGGACATATATAGTTGAGTTGTTGTTGTTTTTTTGAGAATGCA
TATAGACCTGGCCATTCATAAAAAAGATCTAAAGGACACAGAAATAACAA
AAGCAAACCAGCAGCAACTTCACTGTGATAAAAAGACTGATGCTCTAAGA
ATTTCATGGTTTCCCCCACTCACCCCAGTGCCTGTTATTAACCCATTTTA
AAACATGAACCGCTATGGAAAATCTTCAGAGAGGCAATAAATATGGATGG
TGCCACAGCTATCTAACTACCACCTTTGGTTGTATCAATGGCAAAGAAGA
AAATATAGATTAGATTTTTTTTTGTAGTATGGCTTGGGGGAAAAACTATG
TAAGTAAGAGCATGCTGTGGAAACTATATATCTTGTTTTAAAGCTAATTT
ACTTCATGGAAACCTGAGTTTTAATTTCCCAATTTAGAGCCAATCTTTAA
GTATCACTTTTTTCTCTTTCAGAGTTTAATTGTCTGAATTGGACTTATAT
ATTCAGATATACAGACAAACTTGACATTCCTTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_f16.b1 MSMg01no157_f16.b1 CHROMAT_FILE:
MSMg01no157_f16.b1 PHD_FILE: MSMg01no157_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:40 2005
         (313 letters)



>mm_chr13_109545877_109546589
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactcagaggatggcccgtgctccacactggcctgtttctacgacttgatcaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattcactcagaggatggcccgtgctccacactggcctgtttctacgacttgatcaga 454

                                                                       
Query: 64  aagccttagctgctgagacagaacttatcctctttctgccccatccccttgttgttttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aagccttagctgctgagacagaacttatcctctttctgccccatccccttgttgttttac 394

                                                                       
Query: 124 aagccaaagagctcaagcacacaataattgccaggaatcaccatatgtggtagtaccacg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 393 aagccaaagagctcaagcacacaataattgccaggaatcaccatatgtggtagcaccatg 334

                                                                       
Query: 184 tccctcaaggctgaactccagccaaggtgccccatttcctcctcaagatgttgtggggcc 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tccctcaaggctgcactccagccaaggtgccccatttcctcctcaagatgttgtggggcc 274

                                                                       
Query: 244 agcagcctctctgacaaatgtgtcaataaagatacaaccctattcatgtgagtgagcaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agcagcctctctgacaaatgtgtcaataaagatacaaccctattcatgtgagtgagcaga 214

                     
Query: 304 tatttactag 313
           | ||||||||
Sbjct: 213 tgtttactag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_f16.g1 MSMg01no157_f16.g1 CHROMAT_FILE:
MSMg01no157_f16.g1 PHD_FILE: MSMg01no157_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:41 2005
         (284 letters)



>mm_chr13_109374312_109374992
          Length = 681

 Score =  522 bits (270), Expect = e-153
 Identities = 283/290 (97%), Gaps = 7/290 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagtgacagagcactgagtgttataaggtggaaatatttcttcctatctattttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagtgacagagcactgagtgttataaggtggaaatatttcttcctatctattttccc 260

                                                                       
Query: 61  ctattgtcccagtgtcttggctgatttactggtgacgtggaaacagtggtgagtgaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattgtcccagtgtcttggctgatttactggtgacgtggaaacagtggtgagtgaggtc 320

                                                                       
Query: 121 acttgcctagagatatgttgaggacatatatagttgagttgttgttgtttttttgagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgcctagagatatgttgaggacatatatagttgagttgttgttgtttttttgagaat 380

                                                                       
Query: 181 gcatatagacctggccattcataaaaaagatctaaaggacacagaaataacaaaagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatatagacctggccattcataaaaaagatctaaaggacacagaaataacaaaagcaaa 440

                                                             
Query: 241 ccagcagcaacttcactg-t-----gataaaaagactgatgctctaagaa 284
           ||||||||||||||| || |     |||||||||||||||||||||||||
Sbjct: 441 ccagcagcaacttca-tgataaaaagataaaaagactgatgctctaagaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 681
Length adjustment: 9
Effective length of query: 275
Effective length of database: 672
Effective search space:   184800
Effective search space used:   184800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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