BAC Information

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BAC

Clone NameMSMg01-158K18
Chromosome13 (Build37)
Map Location 22,370,087 - 22,370,401
singlet/doubletsinglet
Overlap geneV1ri6
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480
Downstream geneLOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158K18.T7 (MSMg01no158_k18.b1)MSMg01-158K18.TJ (MSMg01no158_k18.g1)
ACCAG358822AG358823
length709713
length of high quality
(start - end)
318 (34 - 351)90 (135 - 224)
definitionCHROMAT_FILE: MSMg01no158_k18.b1 PHD_FILE: MSMg01no158_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:14 2005CHROMAT_FILE: MSMg01no158_k18.g1 PHD_FILE: MSMg01no158_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCAGG
TGCATGCTGTAAAAGAACCATGTACATTTTCATATTTCAGAAATTTCTCA
TTATACGTAGAGACAATCCATGGAGGTGATCATTTGTGTTCCTCAAAGTG
GATTTGGCTAGTTCTCACCTGAGGTCAAAAGATGATTTGGAGTGAGCTCA
TCCAACGAGTAATCTTCCTTTCTCTTATTGGACTTGGAATCTTAGGAAAC
ATCCTTATATTTGTGAGACATGTGCTTACATTTACCATGGGTTCTGAGAA
AAAACCTATAGACCTTATCTTCACTCATCTGGCTTTTTCAAATGTAATCT
TTAGTGGCTCCTNGGCGATNCCATATGTAGCCACAAAACTTCATTTCAAA
AATGTTCTGGACAATGAAAAAAGTAAAACTCTGGTTTATTTGGGAAGGGT
GGCCCGTCGCCTCTCCATCTGCACCACCTGTCTCCTCAGCATGGTCCAGG
TTGTCACCATCAGTCCTAGAACCTCCTTTTTGAGAAAGTTCAGACCACAA
ACAATATGGCAAGTTCTTCCCTCTCTCCTCCTCCTTTGTATCTTTAATGT
TCTCATAAGCTCCAATTTGCTTCATCATATCACAGTGGGCAACAGTTTGA
ATAGATCTAGAGCTGGTGTGTATTATGGGTATTGCTATATGCTGCCATCT
ATGTACACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAAAGAGGCACCTGA
AAAACATGTTCAACATCCTTAATCATCACGGAAATGCAAATCAAAACAAC
CCCGAGATTCCATCTCACACAAGACAAAAGGGTTAAAATCAAAAATTCAG
GTGACAGCAAATGCTGGCAGGAATGTGGAGAAAGAGGAACACTCCTGCAT
TGTTGGGGGAATTGCAAGCGTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAAAAAATTGGAAATAGTACTACTGGAGGATCCAGCAATACCTC
TCTTGTTTTTATCCCCCCCCCACGTTCCAACCGATAAAAAGGACACTTGG
TCCACAAGGTCCATAGAAACCTAATTTATAATAGTCAGAAGCTGGAAAGA
ACCCAAATGCCCCTCAACAGAGGAATGGATAAAGAAAATATGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTC
CTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCA
ATCACAAAAGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAGAAACTTAGAACACCCAAGATATAAGATACAATTTGCTAAACGCAGG
AAACTCAAGACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_k18.b1 MSMg01no158_k18.b1 CHROMAT_FILE:
MSMg01no158_k18.b1 PHD_FILE: MSMg01no158_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:14 2005
         (318 letters)



>mm_chr13_22369883_22370603
          Length = 721

 Score =  594 bits (307), Expect = e-174
 Identities = 312/315 (99%), Gaps = 3/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcaggtgcatgctgtaaaagaaccatgtacattttcatatttcagaaatttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcaggtgcatgctgtaaaagaaccatgtacattttcatatttcagaaatttc 264

                                                                       
Query: 65  tcattatacgtagagacaatccatggaggtgatcatttgtgttcctcaaagtggatttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcattatacgtagagacaatccatggaggtgatcatttgtgttcctcaaagtggatttgg 324

                                                                       
Query: 125 ctagttctcacctgaggtcaaaagatgatttggagtgagctcatccaacgagtaatcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagttctcacctgaggtcaaaagatgatttggagtgagctcatccaacgagtaatcttc 384

                                                                       
Query: 185 ctttctcttattggacttggaatcttaggaaacatccttatatttgtgagacatgtgctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttctcttattggacttggaatcttaggaaacatccttatatttgtgagacatgtgctt 444

                                                                       
Query: 245 acatttaccatgggttctgagaaaaaacctatagaccttat---cttcactcatctggct 301
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 445 acatttaccatgggttctgagaaaaaacctatagaccttattatcttcactcatctggct 504

                          
Query: 302 ttttcaaatgtaatc 316
           |||||||||||||||
Sbjct: 505 ttttcaaatgtaatc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 721
Length adjustment: 9
Effective length of query: 309
Effective length of database: 712
Effective search space:   220008
Effective search space used:   220008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)