BAC Information

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BAC

Clone NameMSMg01-159B17
Chromosome13 (Build37)
Map Location 20,130,555 - 20,130,869
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B17.T7 (MSMg01no159_b17.b1)MSMg01-159B17.TJ (MSMg01no159_b17.g1)
ACCAG359137AG359138
length738741
length of high quality
(start - end)		323 (44 - 366)502 (74 - 575)
definitionCHROMAT_FILE: MSMg01no159_b17.b1 PHD_FILE: MSMg01no159_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:46 2005CHROMAT_FILE: MSMg01no159_b17.g1 PHD_FILE: MSMg01no159_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCTCTAAGGGCTTTGCATACAGATCAAATGCCCATTAGGAAGAGTC
ACTGGGCTTGCACTGCATCTGCCCATGCTGGTTCATGCCTTCTGTGCTGG
AGGGTAAGGAAGCACGCCTGTACTTCAGTTGGCACTTCTGCTAGCAATTG
ACCTATTGAGAAATGCCTTTCCTTCTTAACGTCTCTCAATCCGTTTTCTT
TATTGAATGCGTTGGATATAAATTGTTCACTTCTTTTTAAGTCTAGAATC
ACCCTCTTCTGTTTTTGTGACCTTGGGAAATGATTGTATCCGGCTTTTTG
GGGGCTTTCTTATACTTGACCACGCCCCCTAGCGAGAAGAGGCGTAACTG
CAGGTTCTTCGAATGCAGTGATTCAGTTGTTTGTAATTCAAGGATGACTC
AGTAATCCTGTTTTTTGCTCAGCGTTTCGGATACGAACTACCTCTAATCT
CTTCAATGCACCTTTAAATCTGAAGTGGTTATCAAAAGGTATATTCAGGC
AAATACTTAAAGAATTTGTTGTTGGAACAAATGTTTTGTTTAGGATAACA
TTTCTTAAATACTTATACTATATGTATATATAATGTGACAGACACATAGT
TCATTGCCATAAGGAACCCCTGTACAGTTATTATGTTCAACATATCCACA
ATGTGTAGAGTTATTTATGTTCACATATTCACCATGTN

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTATTT
AATGGGGTTATTTGATTTGCTGGAGTCCACCTTCTTGAGTTCTTTACATA
TATTGGATATTAGTCCTCTATCTGATTTAGGATAGGTAAAGACACCACTT
TCATCAATGGACAGATCGTAGAAACAGAAACTAAACAGGGACACAGTGAA
ACTAACATAACTTATAAAACAAATGGACTTAAAAGATATCTACAGAACAT
TTTATCCTAAAACAAAAGGATATACCTTCTTCTAAGCACTCACGGGACCT
TATCCAAAATTGACCATATAATTGGCCACAAAACAGGCCTCAACAGATAC
AAAAATATTGAAACTGCCCCATGCATCCTATCAGACCACCATGGACTAAG
GCTGATCTTCAATAACAACATAAATAATGGAAAACCAACATTCACATGAA
AATGAACAGCACTCTTCTCAATCATACCTTGGTCAAGGAAGGAATAAAGA
AAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATAC
CCAAACTTATGGGACACTATGAAAGCATTTCTAAGAGGGAAACTCATAGC
TTCTGAGTGCCTCCAAAAAGAATCTATAGAGTAGCCTCCCTATTTGTTTG
ATTTCTCATTTAATATTTCTTTCTATTCTGGTTCTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b17.b1 MSMg01no159_b17.b1 CHROMAT_FILE:
MSMg01no159_b17.b1 PHD_FILE: MSMg01no159_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:46 2005
         (323 letters)



>mm_chr13_20130351_20131073
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctctaagggctttgcatacagatcaaatgcccattaggaagagtcactgggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcagctctaagggctttgcatacagatcaaatgcccattaggaagagtcactgggc 460

                                                                       
Query: 65  ttgcactgcatctgcccatgctggttcatgccttctgtgctggagggtaaggaagcacgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttgcactgcatctgcccatgctggttcatgccttctgtgctggagggtaaggaagcacgc 400

                                                                       
Query: 125 ctgtacttcagttggcacttctgctagcaattgacctattgagaaatgcctttccttctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctgtacttcagttggcacttctgctagcaattgacctattgagaaatgcctttccttctt 340

                                                                       
Query: 185 aacgtctctcaatccgttttctttattgaatgcgttggatataaattgttcacttctttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aacgtctctcaatccgttttctttattgaatgcgttggatataaattgttcacttctttt 280

                                                                       
Query: 245 taagtctagaatcaccctcttctgtttttgtgaccttgggaaatgattgtatccggcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taagtctagaatcaccctcttctgtttttgtgaccttgggaaatgattgtatccggcttt 220

                          
Query: 305 ttgggggctttctta 319
           |||||||||||||||
Sbjct: 219 ttgggggctttctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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