BAC Information

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BAC

Clone NameMSMg01-160I23
Chromosome13 (Build37)
Map Location 96,509,164 - 96,509,421
singlet/doubletsinglet
Overlap geneIqgap2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, F2rl2
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160I23.T7 (MSMg01no160_i23.b1)MSMg01-160I23.TJ (MSMg01no160_i23.g1)
ACCAG360198AG360199
length702731
length of high quality
(start - end)
262 (46 - 307)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no160_i23.b1 PHD_FILE: MSMg01no160_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:33 2005CHROMAT_FILE: MSMg01no160_i23.g1 PHD_FILE: MSMg01no160_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGCAGCTGGGGTTCCCTGCACATGACCTGCATAAGACAATTAA
AAAAATACTTTTGAAATAAAATCACAGATGTCAACCAGTGGCCAACGATG
TAAACAGCCCCCCAACACACGCGAGGAAATGGATGTGACAGGATTGAGAA
ACATGATGGGAGCAGGCTACATCCAGCAACAATAGGGGACACGGCCTGGC
TGGAAGCCATCAGAGCCTTGGTTCCAGGTGGNTGACCAGTGCAGAGGTTC
AAAGCATGGANNGACAACCTTGGCCAGCTTAACCCGAGCNCCCCAAAAAA
GAAGGNTTTTTTTCTTTCCCCCACCCCCCCCCTTACTCTGCCTTTTGTAT
GTTCCCCACAAAAAAAAAAANNCCCCCTGATTCNCCTGNAACTTCTANGC
TGAATGAACACNNACCGAAAACCCATGTTCACACNCTCCCCAAAAAAAGC
CCAAAAAAAAAAAAGAATTTTTTNNNTAAAAAAAAAGTGCACGGGGGCTG
GGGGGAAAAAACTTANNNNNNANTAAATTAAAGTATGTGNCATTTCANNC
CTCCCCNCNTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANTTTGTTATTTGGGTGT
TG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGGGGTGGGGAGCTGGCCCAAT
GGGTGACGCGTGAGCACCAGAGTGCATAGCTCAGGCACTGCATGTGGGGG
TGCTGGCATGTGCCTGAACCTCTACTGATGGAGAGGAAGGCAGAGACAGG
CAGATTCTGGGCGCTCATTGGCCAGCCAGCCTAGCCAAACTGTTGAACTC
CAGGTTCAGTGAGAGGCCCTGTCTTACACCTAAAGTAGGAGGTGACACAG
GAAGGCACCCAGTGTCAACCTCTTTCATCTCAATACATGTGCATACATAT
GCACACGACCTTTTTTTTGCCCACCCCCCCTTAATACACATGTAAATGAC
CATTTGTGTATGTACGCCCCCCAGAAAGAAAAAAATTGTGGGGGTTGGCC
GGTCCCTCTCGAAATTCCATCCTCTTTACTTTCGGCAACACCACACCTCC
ATTTTCCCCTCTTACCGCCCCGGTTTCCCATAATTCTCCTCATCCTCTCT
TTTACTTTTTCTCTTTTTCCCCCTTAACTTTTTTTTTTTTTTTACACCTT
CTCTTTATTCCTTTTTCCTCCTCCCATATTTTTCTTTTTTTTGTCCTTTC
TCGATTTTTTTCTCATCCAGCTAATCCTTTTTTTTCTCCCCACCTCCCCG
TCCGTCTTCTTCTTTTTCCTTTCCTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_i23.b1 MSMg01no160_i23.b1 CHROMAT_FILE:
MSMg01no160_i23.b1 PHD_FILE: MSMg01no160_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:33 2005
         (262 letters)



>mm_chr13_96508916_96509577
          Length = 662

 Score =  485 bits (251), Expect = e-142
 Identities = 256/258 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagcagctggggttccctgcacatgacctgcataagacaattaaaaaaatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattcacagcagctggggttccctgcacatgacctgcataagacaattaaaaaaatact 447

                                                                       
Query: 65  tttgaaataaaatcacagatgtcaaccagtggccaacgatgtaaacagccccccaacaca 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tttgaaataaaatcagagatgtcaaccagtggccaacgatgtaaacagccccccaacaca 387

                                                                       
Query: 125 cgcgaggaaatggatgtgacaggattgagaaacatgatgggagcaggctacatccagcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgcgaggaaatggatgtgacaggattgagaaacatgatgggagcaggctacatccagcaa 327

                                                                       
Query: 185 caataggggacacggcctggctggaagccatcagagccttggttccaggtggntgaccag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 caataggggacacggcctggctggaagccatcagagccttggttccaggtgggtgaccag 267

                             
Query: 245 tgcagaggttcaaagcat 262
           ||||||||||||||||||
Sbjct: 266 tgcagaggttcaaagcat 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)