BAC Information

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BAC

Clone NameMSMg01-160J01
Chromosome13 (Build37)
Map Location 20,887,874 - 20,888,157
singlet/doubletsinglet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J01.T7 (MSMg01no160_j01.b1)MSMg01-160J01.TJ (MSMg01no160_j01.g1)
ACCAG360202AG360203
length728702
length of high quality
(start - end)
117 (138 - 254)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no160_j01.b1 PHD_FILE: MSMg01no160_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:33 2005CHROMAT_FILE: MSMg01no160_j01.g1 PHD_FILE: MSMg01no160_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAGAAACAGCGG
AANNCAGNGGNGATTTTTCGAAAAGAAAAGNCAACAGAGGGNNAGGGCAG
AANTATGGGGNTNAACACATTTCGAACCAAAAAAAAGAAGAAAAGCATGG
NAAANAGAAAGAAAATGCCTACTTCCTCAAACAAAATGCTTTGGCAATTG
TTTCAGTCTTGGCTAAGGCATATATGATTTTTGGCTTGTGTTTACTTTAT
GGGCCAATTATCAAACCCTGATGTGACTATGAATAAAGATTATGTAGAAT
ATGAAAAACAAATTACAGAGATGATTATTTTTTTTTTACAGATTCCAAAG
AATGGGTGCCAGAATGTTTTTTTTTTTCCCGAGCAGGCGCCCCNGGAAGA
GATGGGGNAGGGNAATTATCTACTANCTCTTAAANTGATNAAAACTGCTT
CTTTAGAAGAGAAATCACAGGTGATAAAATATCCCCTTACTTCCATCANC
CTCTTTCTCTCGTACATTGATGACTCTGGNTTATTTAAATGCATTTTTAG
ATGGCTAANTTTATAGACTTAAAGGAATATTCGGAAGTTTATTTAAAACT
TCGCTGTATCAGCCAGTCTAGCCAGTAGAGAGACCACAAGNCCCTTTGAT
AGNTCAATGATATGATGAAACTCAAAATGGTCGAGAAATAGTCTTAACTC
TTAGCACATCGAACATCACACTTAAACC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTAACATGGCTTCCAACAATCCAC
AGCCTTGCTGGGGACCTGGCAGGGAAGGAAATGGGAACCTTGTGTCCACT
CTACTGGTGTGAAGGTCTGGGGATATCATGGTAGATTGCTAGACTAAACC
CATTTGTATCCCCCTGGAAACAGAAGTAACTCCCGGAGACTTTCCCTGGT
GGATTTCATTTGATAAGCTTGAAGCAGCTTTGAGAAAATAGAATGGCAGC
AAGCTGTGATTTTAGGAAACTAAGTAAAGATGACCCCTCATCCTACACCT
GGTTCCAATTTATCCATTGCACCCGCCTTCTTTGCTATTTTAAAAAGGCT
TTGCCTCTAGAGACACATTCCCTGGCGTGTATAATAAAATCATGGTTTTG
TTCAAAACCTGACTAAGTCAGACTTTTTGTTATTGCTTCTACACCGAACT
CCTAAGTGTCAGAACTTGTACCCAGGTTCCCTGTGTGTAGTATTTGGCCA
CCACAGTTATCCATAGGGTGATTTTTGGGTAGGACTCCATATTGAGTCTG
TTTACTCGTAATAGTATCAAAAATTTGAGCCAATGCGTCACCACAACCCA
TTGCCGTCTTAGTCCTTTCTTCTGCGCCATGTCAATTGTTTTACCTGGCA
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j01.g1 MSMg01no160_j01.g1 CHROMAT_FILE:
MSMg01no160_j01.g1 PHD_FILE: MSMg01no160_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:33 2005
         (285 letters)



>mm_chr13_20887674_20888358
          Length = 685

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaacatggcttccaacaatccacagccttgctggggacctggcagggaaggaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcttaacatggcttccaacaatccacagccttgctggggacctggcagggaaggaaatgg 425

                                                                       
Query: 61  gaaccttgtgtccactctactggtgtgaaggtctggggatatcatggtagattgctagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaaccttgtgtccactctactggtgtgaaggtctggggatatcatggtagattgctagac 365

                                                                       
Query: 121 taaacccatttgtatccccctggaaacagaagtaactcccggagactttccctggtggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaacccatttgtatccccctggaaacagaagtaactcccggagactttccctggtggat 305

                                                                       
Query: 181 ttcatttgataagcttgaagcagctttgagaaaatagaatggcagcaagctgtgatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttcatttgataagcttgaagcagctttgagaaaatagaatggcagcaagctgtgatttta 245

                                                       
Query: 241 ggaaactaagtaaagatgacccctcatcctacacctggttccaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggaaactaagtaaagatgacccctcatcctacacctggttccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)