BAC Information

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BAC

Clone NameMSMg01-160O02
Chromosome13 (Build37)
Map Location 23,986,335 - 23,986,643
singlet/doubletsinglet
Overlap geneSlc17a1
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneSlc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160O02.T7 (MSMg01no160_o02.b1)MSMg01-160O02.TJ (MSMg01no160_o02.g1)
ACCAG360432AG360433
length728823
length of high quality
(start - end)
314 (36 - 349)---
definitionCHROMAT_FILE: MSMg01no160_o02.b1 PHD_FILE: MSMg01no160_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:58 2005CHROMAT_FILE: MSMg01no160_o02.g1 PHD_FILE: MSMg01no160_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGG
ACAAGAGACAGATCTCTTATCTGCTGCTTGTCTTTGTTGGTTTGGCAGAG
GCCAGCATGATCTCTGTGAGTTTGAGGTGAGACTGTCTCTGAAGTGAGTT
CTAGGCTAGCTAGGGTTACACAGCAAAACCCTGTCTCAAAATAACAAAAA
CAAAATCAAGTCAACCAAACAGAAGAACTCAACCACAAAAACAAAACAGA
ACAGAATAATGTGCGCTTTCTTCGTTGTTGCTCCAGTTGGGGCCCTGTGT
GTGCAGTCTGACTTTGCATCCCAGGTTCTGGGGAGGATGCATGAATCCTT
ATTTGCTGACCCCCCCCACAGGCAAAGGCCAGGCTCATCCTAGTCTGTCA
ATACCCCCCTCTCAACAACTAAGTGGCAGTGATGGTTCTCAGATAGGTGC
TTCAGTGTAGGGACACAGAAGTTGGAGTGTGTGTTTGGTTGATAATCACC
AAGAAAAGCTTTATTTTCATTTTCTTAATGACTAATTCGTTTATTGAGAA
TTGAAATTTGGTAATTCTCTGAGAGAGAACCTATTATCACTATCAATGCT
ATGTTGTTGCTCTTGATAGTATTTATATGTAACTGCATGTATGCCCACTC
TGATTGATATACCGCGCTTTCTATTTCGTTTTTATTCTATCTTATTATTC
CCCCCCCATCTATATCTGCGCATTATCC
CAATGACACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGGTTAAGCCTTTCTCCCAGCCT
TGCCACCAAAACCCTGTGTGTGTTTGTGTGTGTGTGTTTATATAAGAAAA
ACACCCAACCAAAAACAACCAACAATACACCCTTCCCCCTCCCCTCTCTT
CCTCCTACCTAATAAAATACAATAACAACAAAAAATTTAACCTACAAATA
CCCCACACATCCAATTACACACCAAATACCAATATATATTAATATACTAA
CAAACTACCCCACCAAAAACAAAAATCTTATTACCCCACTTATACAACAC
ACAAAAAAAACAAAATTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAA
AAAAAATAATCAACATCACATAATATCCCCCCCCCCCTTAAAAAAAAAAA
AAAAAACCACCCCCTCTTCCCCCCCCCCTAATAAAAAAATCTATTAAAAA
CCTAACACCCCCACCACCAAAAAAATTACACCCTTCTCCCACAACACATC
AAATAAAAAAAACAAAAAAAACCAAAACATAATACACAACATAACACAAC
AATTAACTCCAACACACAACCAAAATTATACTACCCTAAAAAAATACCTA
CCCCTACTCCAACTTACTCTCCCACCACATTAATATCTCCCCCACCCAAT
AATCACACCCATCATCAACTTAATATACACACATACATCCTCCCCTCACA
CTTACACCCATTCATATAATCTATACTAACCTCTCTTACTATTCCCCATC
CCATCCACACACTTATACTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_o02.b1 MSMg01no160_o02.b1 CHROMAT_FILE:
MSMg01no160_o02.b1 PHD_FILE: MSMg01no160_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:58 2005
         (314 letters)



>mm_chr13_23986131_23986844
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggacaagagacagatctcttatctgctgcttgtctttgttggtttggcaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggacaagagacagatctcttatctgctgcttgtctttgttggtttggcaga 264

                                                                       
Query: 65  ggccagcatgatctctgtgagtttgaggtgagactgtctctgaagtgagttctaggctag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccagcatgatctctgtgagtttgaggtgagactgtctctgaagtgagttctaggctag 324

                                                                       
Query: 125 ctagggttacacagcaaaaccctgtctcaaaataacaaaaacaaaatcaagtcaaccaaa 184
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ctagggttacacagtaaaaccctgtctcaaaataacaagaacaaaatcaagtcaaccaaa 384

                                                                       
Query: 185 cagaagaactcaaccacaaaaacaaaacagaacagaataatgtgcgctttcttcgttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 cagaagaactcaaccacaaaaacaaaacagaacagaataatgtgctctttcttcgttgtt 444

                                                                       
Query: 245 gctccagttggggccctgtgtgtgcagtctgactttgcatcccaggttctggggaggatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctccagttggggccctgtgtgtgcagtctgactttgcatcccaggttctggggaggatg 504

                    
Query: 305 catgaatcc 313
           |||||||||
Sbjct: 505 catgaatcc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)