BAC Information

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BAC

Clone NameMSMg01-161F03
Chromosome13 (Build37)
Map Location 45,966,107 - 46,049,345
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F03.T7 (MSMg01no161_f03.b1)MSMg01-161F03.TJ (MSMg01no161_f03.g1)
ACCAG360753AG360754
length1,1981,229
length of high quality
(start - end)		424 (27 - 450)378 (70 - 447)
definitionCHROMAT_FILE: MSMg01no161_f03.b1 PHD_FILE: MSMg01no161_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:48 2005CHROMAT_FILE: MSMg01no161_f03.g1 PHD_FILE: MSMg01no161_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,048,941 - 46,049,345)(45,966,107 - 45,966,484)
sequence
NNGGGGTAATGGCGTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTC
TCGTGAACAAGACAGGCAGCCAAGGAGTCTTTCTTATCTTGGGGCGGCTT
ATTGAGGTGCAGGGGTTTCTAGCCTCACAAACAAGGTAAGCGTCATGTGG
AGACTCAGGGTCTTACTGACAAAATGGTGCAGTGTCACCTTGAACAGTGT
TAGGCCGTTGATCTTCTCTCTGATTGCGTTGAAAAGGAACGTATATGCAT
TATCTAAGCATCTTGCATACATAATGGCCTCATTATGGTCCACACAGTTG
ATGGCTGTATGTGGGCAGGGAGAGAGTATCCTGTTGCATCCTGATATATT
CAAGTTATTCTTTTAAATGAAAGTCTGGATTATTATTTCTGGCTCTTGTT
ATTTTATGAGTATGATACAGCTGAGCCAGCTATGACCTAACTTATTCTTT
TTTTCTCCCCCCCCCCAAGAAATGATTCATTCATATATAAAAAGTGTATT
TTCTTTTCAACTCCTTCATGGTGCTCTGGACATGAGAGAGCGCAGGAGCT
ACCGGAGATTATCCATTCTTCGTGACCAGGGGAGAGAAAGAAGGAGTGCA
CCCGGAATAGTTAACAAAGCTGAGGGGGTTGGGTTGTACTTGCTAGGGGG
TACACTCTGACCCGGAAGGAATTCTGAAAGGTGGTGGGAGTTTAGGAAAG
ACTGTGAGGAGGAGGAGGATCACTTGATCTAGGCTCCTGAGGCTGGATTG
CACTTTTGTGTAAAGAGATGTATATATTTTTACTAAGCTTGCCTTTGGTT
TTAATAATTTATCCTTGTTTGTTTTTTTTGATTCATTTTTCCTTGATCTT
TGTTTTTTATTCTGTATTTTTCTATTCGATTTTATTAATTCATGCTTTCT
TTTCTTACTTTTATTTCTTTTACATATTATTNTCTCATTCTTCTTTTTTC
TATCTATATCTTTTTTTTATATCTATTAAAATATCTCTTTCTTTCTATTC
TTATTTTATATATTTTTATTCTATTTTATATATTACTCTTCTTTACTCTT
TTTAATTCTTTTNTCTACCTCTTTCTTATTATTCTTCTTCATTCTATTTA
TTTTTTTTTTTTTGCTAATTTCCTTTATTTTTTCTTTTTTTAATTTATTA
TTTTTTATACTCTCATATTCATTTTTCTTTTTATTCTTCCTACATTAT

NNNAATAGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAATGATTTGAAAGTCCAAGTTCTCTTTAAA
AGTCTAAAGTGGGGTGCTATAAAATCAGAAACAAGTTATATGCTTTCTTA
TATCAAGACAGAAGAACCAGGGTATAATTACAATCAGATCGAAGCAAAAG
AAAAACATGCCCCATGATGCAATTCTTCTCCACTCTCTCCTAGGACTGTA
GTTTATCTTCCACTAAAACAAACTGGAAATGAGGGCAGGGAAAAAGTTGA
AAGGAGGGCTCTTAACTCCAGACTTAGTGGCATTCAGGACCAGATAATTT
GGTGGCCCTAAACTTTAAACTGGCAGGTAGGTGTTCAGCAGACCTCTGGT
CTCTATTTGGTGCCAGAGTCTAATTTGGTTACCCCTTGTCCCCAATGGTG
ATTTTTTTTCCCCCCCCCAGATGCCTTGGTTGAGACCCATGAAAAAAAGA
GGTGCACCAAATCCTCAGACGGTTTCTCACCCTGAATGAAGGCTTTGGTG
GGGATAGAATGGCTGACCACCCTGAGTAGGAAATGCTTGGGACTACAAGT
GATCCAGGTTTCAGAGTTTTTAAGATTTAAAAATACTTACATATAAATTG
AGTACCTGGTAGATATTATCTGAGCGAAAAAGCAAGCCTGTATTCCATAT
ACAACTTGTAGCGCACCTATCCTGCCGAATGTCATCTTATATAACATTTT
AAGTAATTTTCTTCACGAAACAGGCTTCATTGGGATTTTTCTACTGCGGC
AGGTTGCCGTTCTAAAAGCTTCAAATTTGGGGCTATTTCAGATCTTCCCA
GTAGGGATACATATATACACTCTTAAGTTACAGCTGGTCTCTTTCAATGA
GTTTTCCCAAGAATTCAGGGTGTTTGGCATTCCAAACAGCTTTTAATCAA
AATTTCACCCCGGAATTTTTTTTTTTTTTTAAAGGGCCCCCTAAATTTAT
TCCCCCTCCCCGGGATGTAAAAAAAATTTTTTTTGAGTAACCCCCACTTA
ACCCAAAAAGGATTTTCTTTTTAAACTGCTTAAATGGTGTATTGAAGGGC
TAAAATTCTCTTTTCCTCCCCCGGTGTATGGGTTTCTTCCTCCCCCACTT
TTTTTTTTTTTTTTGTCCTGGGGTCCTATCACACACCCCCCCTACAAATT
ACATTTTGTATCATTTCTTCAATACCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f03.b1 MSMg01no161_f03.b1 CHROMAT_FILE:
MSMg01no161_f03.b1 PHD_FILE: MSMg01no161_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:48 2005
         (424 letters)



>mm_chr13_46048725_46049548
          Length = 824

 Score =  768 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctctcgtgaacaagacaggcagccaaggagtctttcttatcttggggcggcttat 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattctctcgtgaacaagacaggcagccaaggagtctttcttatcttggggcggcttat 562

                                                                       
Query: 77  tgaggtgcaggggtttctagcctcacaaacaaggtaagcgtcatgtggagactcagggtc 136
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggtgcaggggtttctagactcacaaacaaggtaagcgtcatgtggagactcagggtc 502

                                                                       
Query: 137 ttactgacaaaatggtgcagtgtcaccttgaacagtgttaggccgttgatcttctctctg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttactgacaaaatggtgcagtgtcaccttgaacagtgttaggccgttgatcttctctctg 442

                                                                       
Query: 197 attgcgttgaaaaggaacgtatatgcattatctaagcatcttgcatacataatggcctca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcgttgaaaaggaacgtatatgcattatctaagcatcttgcatacataatggcctca 382

                                                                       
Query: 257 ttatggtccacacagttgatggctgtatgtgggcagggagagagtatcctgttgcatcct 316
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttatggtccacacagttgatggctgtatgtgggcagggagagagtatcctgtagcatcct 322

                                                                       
Query: 317 gatatattcaagttattcttttaaatgaaagtctggattattatttctggctcttgttat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatattcaagttattcttttaaatgaaagtctggattattatttctggctcttgttat 262

                                                        
Query: 377 tttatgagtatgatacagctgagccagctatgacctaacttattc 421
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgagtatgatacagctgagccagctatgacctaacttattc 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no161_f03.g1 MSMg01no161_f03.g1 CHROMAT_FILE:
MSMg01no161_f03.g1 PHD_FILE: MSMg01no161_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:48 2005
         (378 letters)



>mm_chr13_45965907_45966684
          Length = 778

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgatttgaaagtccaagttctctttaaaagtctaaagtggggtgctataaaatcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgatttgaaagtccaagttctctttaaaagtctaaagtggggtgctataaaatcaga 260

                                                                       
Query: 61  aacaagttatatgctttcttatatcaagacagaagaaccagggtataattacaatcagat 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaagctatatgctttcttatatcaagacagaagaaccagggtataattacaatcagat 320

                                                                       
Query: 121 cgaagcaaaagaaaaacatgccccatgatgcaattcttctccactctctcctaggactgt 180
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagcaaaagaaaaacatgcgccatgatgcaattcttctccactctctcctaggactgt 380

                                                                       
Query: 181 agtttatcttccactaaaacaaactggaaatgagggcagggaaaaagttgaaaggagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttatcttccactaaaacaaactggaaatgagggcagggaaaaagttgaaaggagggc 440

                                                                       
Query: 241 tcttaactccagacttagtggcattcaggaccagataatttggtggccctaaactttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaactccagacttagtggcattcaggaccagataatttggtggccctaaactttaaa 500

                                                                       
Query: 301 ctggcaggtaggtgttcagcagacctctggtctctatttggtgccagagtctaatttggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ctggcaggtaggtgttcagcagacctctggtctctatttggtgccagagtcaaatttggt 560

                             
Query: 361 taccccttgtccccaatg 378
           ||||||||||||||||||
Sbjct: 561 taccccttgtccccaatg 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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