BAC Information

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BAC

Clone NameMSMg01-161L03
Chromosome13 (Build37)
Map Location 39,061,099 - 39,229,425
singlet/doubletdoublet
Overlap genenone
Upstream geneSsr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161L03.T7 (MSMg01no161_l03.b1)MSMg01-161L03.TJ (MSMg01no161_l03.g1)
ACCAG361033AG361034
length1,1951,218
length of high quality
(start - end)		412 (42 - 453)380 (78 - 457)
definitionCHROMAT_FILE: MSMg01no161_l03.b1 PHD_FILE: MSMg01no161_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:35 2005CHROMAT_FILE: MSMg01no161_l03.g1 PHD_FILE: MSMg01no161_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,061,099 - 39,061,502)(39,229,046 - 39,229,425)
sequence
NNGGTCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAGTCTCTTATACTTTATCATGGCTTCATTCTAGTTCTGATGCAAGTGT
ATAAATACTCAATTCAAACAGCTTACACTTAAGAATCTATTTTTACATTT
TTTATTAGTTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCC
TCCCCCCGCCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCTCTGGC
ATTCCCCTGTACTGGGGCATATACAGTTTGCAAGACCAAGGGGCCTCTCT
TCCCAGTGATGGCCCAGTAGGCCATCTTCTGCTACATATGCAGCTAGAGA
CACGAGCTCTGAGGTTCTGGTTAGTTCGTATTGTTGTTCCAGCTATAGGT
TTGCAGACCCCTTCAGCTCTTTGGGTACTTTCTCTAGCTCCTTCATTATG
TTTTTTGTCCCCCCCCTTATAGATGACTGTGAGCATCCACAAAAGAGGTT
GCCAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTC
AGCAAAATCTTGCTGGCATATGTAAGAGTGTCTGGGTTTGGTGGCTGATT
ATGGGATGGATCCCAGGGTATGGCAGTCTCTGGATGGTCCATCCTTTTGT
CTTACCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGCGTTTTCTTCC
CTATTCTAAGGAGGAATGAAGTATCCACACTTTGGTCTTCATTCTTCTTG
ATTTTCTTGTGTTTTGCAAATTGTATCTTGTGTGTTCTAAGTTTCTGGAC
CTTTTATATATGTAGTGCATAAAATTTGAGTGGCTCGCCAAAGGTTATCC
GGCTATTATTCCCTGACCTCCCCCTTTTTGGGACTTTTCCGAAGTTTTTC
CTCTTTCAAAATTTTGTCTCTTTTGTTTTATTTTTTTTATTTTTTTTTAT
ATTTTTCTTTTATCTCTCTCCTCTTTTACTCTTCTTGTTTTTCTTTTTAT
TCTATTCCTTTATTTCTCTTACTTATTCCTATTTTTTTTTTCCTCCTTTT
TTTTTATATCTAATTACTTTTTTGTCTTTTTCATTTTTCTATTGTTTCCT
CTATCTTTCTATTTTGCCTTCTTCCTCTTAATTACTCCTCTTCCATCCTC
TCTTCCTATTAATTCATTTCCTCTTCACGAATACCTTCTATTTAT

NNNTTTATGAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTTAGTAAATTATCAGTGATTTATTTTGTT
AAAAAGAACACTATATAATTCGACTAAAACTGATTTTTATTTGTGAGAAT
TACTCTAGAAAATCTATAAGAATATTCAGATTTTATGCTTCAAATCATTT
CAAAATAAGCAATAATAGACATTAGTGAGTCCTAATTTAAGCATATTTAT
AATTTTAGGTTTTTCTATAGAGCCTGGTATGCAATGTACTTAACTGATAT
ACAGAAATAATGTGCTTAGAGGTATTAAAAACAAGCCAAGTATCCATAAT
CAATGAATGATAAGCAAAGTTTTGCTACGTGTATAGGATGGAGCACAATT
TACTCAACCTTACAAAGAATGAATTCTTGTTCTTACCAATACTAGGTCCC
AGTTAGACCGCACGAATAAATTCAAGAAATCTATTGTAAACCTTGGTGAC
TGTAGTCAGAGAATATAAACTTTATATTTGAAAATATAAATTTTCAAAGT
GTAGATTTTAAGTATGTTTCCCACAACAAAAGTACTAGCTGTATTATGTG
GTACAGTGCATATGTTGATCAGCTTAATTTAGCAATGCCATAATGCATAC
ATCTGTGGAACCATGTTATGTATATTATAGATATGTAATATAATATGTTA
TTTGTCCACTTTCAAAAGGATGATAGCAAGGGAAGTTTTGTGACTAACAA
AAAGCATGCATGTGTGCCTAGAAAGGAGGCCCACAGACACCATTAAAATG
TGAATATCAACGTCGGCCTGTCACTTCTAGCTTGACACTAGGGTCACAAC
CAAGCAGATCTGTCCCATTAAGCCAAACTCAGGCTCTCTTGGATTTCAAC
CTGTAACATTCCTACTTTAAAAAACAAACTCTAGTTTAAACTGTACCTGT
ATTCCCATTTTCCCTCTCTGTGGATCCCCCCCAAGAAGCCTTTCTTTTTT
AAAAAAATATGACAAAATGGTTTTCTTTTGTAAAAAAGTAAGTCTTTTTT
CTTAACCGAAAAAAAAAAAGGTTTTAAAAAGATTATCCCCTCCAGATACT
TTGTCTCCTTTTATCCTCCAAATTTATCAAATTTTTCTTCTAAACTCTCT
AAAATTATTTATATACTTCCTCCTTATATAAGAGTCTCTATAACCACTCC
ATTTCGTTTAATTGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_l03.b1 MSMg01no161_l03.b1 CHROMAT_FILE:
MSMg01no161_l03.b1 PHD_FILE: MSMg01no161_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:35 2005
         (412 letters)



>mm_chr13_39060896_39061707
          Length = 812

 Score =  750 bits (388), Expect = 0.0
 Identities = 400/404 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctagtctcttatactttatcatggcttcattctagttctgatgcaagtgtataa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagtctcttatactttatcatggcttcattctagttctgatgcaagtgtataa 263

                                                                       
Query: 64  atactcaattcaaacagcttacacttaagaatctatttttacattttttattagttattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atactcaattcaaacagcttacacttaagaatctatttttacattttttattagttattt 323

                                                                       
Query: 124 acatttcaaatgctatcccgaaagttccctataccctccccccgccctgctcccctaccc 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 acatttcaaatgctatcccgaaagttccctataccctccccccaccctgctcccctaccc 383

                                                                       
Query: 184 acccactcccacttcttggctctggcattcccctgtactggggcatatacagtttgcaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acccactcccacttcttggctctggcattcccctgtactggggcatatacagtttgcaag 443

                                                                       
Query: 244 accaaggggcctctcttcccagtgatggcccagtaggccatcttctgctacatatgcagc 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accaaggggcctctcttcccaatgatggcccagtaggccatcttctgctacatatgcagc 503

                                                                       
Query: 304 tagagacacgagctctgaggttctggttagttcgtattgttgttccagctataggtttgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 tagagacacgagctctgaggttctggttagttcgtattgttgttccagctatagggttgc 563

                                                       
Query: 364 agaccccttcagctctttgggtactttctctagctccttcatta 407
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 agaccccttcagctccttgggtactttctctagctccttcatta 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no161_l03.g1 MSMg01no161_l03.g1 CHROMAT_FILE:
MSMg01no161_l03.g1 PHD_FILE: MSMg01no161_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:36 2005
         (380 letters)



>mm_chr13_39228846_39229625
          Length = 780

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattatcagtgatttattttgttaaaaagaacactatataattcgactaaaactgatttt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 580 aattatcagtgatttattttgttaaaaagaaaactatataattcgactaaaactgatttt 521

                                                                       
Query: 61  tatttgtgagaattactctagaaaatctataagaatattcagattttatgcttcaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 520 tatttgtgagaattactctagaaaatctataagaatattcagattttatgcttcagatca 461

                                                                       
Query: 121 tttcaaaataagcaataatagacattagtgagtcctaatttaagcatatttataatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttcaaaataagcaataatagacattagtgagtcctaatttaagcatatttataatttta 401

                                                                       
Query: 181 ggtttttctatagagcctggtatgcaatgtacttaactgatatacagaaataatgtgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 400 ggtttttctatagagcctggtatgcaatgtacttaactgatatacagaaatgatgtgctt 341

                                                                       
Query: 241 agaggtattaaaaacaagccaagtatccataatcaatgaatgataagcaaagttttgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agaggtattaaaaacaagccaagtatccataatcaatgaatgataagcaaagttttgcta 281

                                                                       
Query: 301 cgtgtataggatggagcacaatttactcaaccttacaaagaatgaattcttgttcttacc 360
           | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 280 catgtataggatggagcacaattcactcaaacttacaaagaatgaattcttgttcttacc 221

                               
Query: 361 aatactaggtcccagttaga 380
           ||||||||||||||||||||
Sbjct: 220 aatactaggtcccagttaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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