BAC Information

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BAC

Clone NameMSMg01-161O05
Chromosome13 (Build37)
Map Location 95,533,486 - 95,533,894
singlet/doubletsinglet
Overlap genenone
Upstream geneArsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
Downstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161O05.T7 (MSMg01no161_o05.b1)MSMg01-161O05.TJ (MSMg01no161_o05.g1)
ACCAG361176AG361177
length1,1521,226
length of high quality
(start - end)
414 (42 - 455)272 (133 - 404)
definitionCHROMAT_FILE: MSMg01no161_o05.b1 PHD_FILE: MSMg01no161_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:01 2005CHROMAT_FILE: MSMg01no161_o05.g1 PHD_FILE: MSMg01no161_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGTTTTAATTACAGTGGTAAAATACTAGCTCTAAGTAGACTGGATGTT
ATTATACTCTTCAGAATAACAGGACAAGAAGGGAACTTGAGAACCCAAAT
TGTAATAAATAAATCAAAATGATAACAATTATTCAAATGCTGCAGTGGAA
ATCAAGAAATATTAGAAGAAGAAAGAGTACTGAAGTTTAGGGAACAACCT
GATATACCCTTTAATCTCAGTACTCAACAGACAGAGGCAGGTAGGTATAT
CTCTGAGATTTCAAGGGTAGCCTGGTCTACATAGTAAGACCGTGTCTTTA
AAAAGTTTCAAACAAAAACAATCAAGCAAAAATTAAGGTGACAAATAATA
AAGTATATGGCCTAAATCTAGCCATATCAAAACTTAGGTCAAATGTAAAT
GTTCTTTTTTACCCCCCCCCACTCTCAGATCACTCAAACAAAAAAGAAAA
CGAAACCAAAACAGATTCTCTCTTCAAGAATCTTGAGTTGTGAAGCATTG
TCCCCTAGGCATATCATAGCTGTAGCCATCTTAATCAGGCAGCTGGGATT
ACCTATGAGGGCCCTCAACTAGAAGGCCCTTTGACACTCTCTTGTAGAAG
GAGGAGTTGGGGAGTGTCTGTAGGTTCTNGTCTCTCCCTCCCTCCTGTGC
CGTCCTCTTGTGCCCTCTCTCCCTCTTTGTGCCCCCCCCCCCTTCTCTAA
TTCTGCCTCAGCCTGTTTGTGGTTCCTGGCGTTGCTATTTTTTTATGGCG
GTATTATTTAATTAAAAATGTTCATCTCCTTTTGAATTTTTTTTTATATT
GTCCTTTCCCTTTAAATTATTTTTTTCTTTTTTCATTTCTTTTTTTATTT
TCTCTCTTTCTACTTTTTTTTCTTTCTATATTATTTTATTTTACATCATT
TTTCTTTTTCTTCTCTAATCTATTTCTCCTCATTTTCCACTTATTATTTT
TTATTTTTTTCTATTCCTTTTCTTTTTCTAATCTATTTTTATATTTTTAT
TTCTTACTATTATTTAATTTTCTTCTTTTTTTTTCTTTTATAATCTTTTT
ACCTCCATTTTAATTCTTTTATTATTCTTTTATTTCATTTCTTATCTTTG
TA
NNNAAAAGAAGTGAGGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTGGCACAGGAAAAGACTTTCTGAATAG
AACACTGTTAAGCCAGTCTCTAAAACCACCTTAATAAATGTGACTTTACA
AACCTGAAAAGGTTCTGTATGGCAAAGAATAGCATCAGTTGGACAAAGCA
GCAGCCTACAGAATGGGAAAGGAGTTTTACCAACCTCACATCTGGTAAAG
AGCTAATATCCAAAGTATAAAGATAACTCAAACACCTACATATCGAGAAA
ACAAATAACCCAATTTAAAAAATAAAAATGGGGGCTGGTGAGATGGCTCA
GCAGGTAAAAGCACCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCC
AGCATCCACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTC
TTCTGTTTTTTCCCACCCCCCCTACAGTGTACTTACTTATAACAAAAAAA
TAAATCTTTAAAAAAAATAAAAATAAAAATAAAAATGGGGTACAGACCTA
AAAAGAATTCTCAGTATAGGAAACACAACTATTTGGCTGAAAGATTAAAA
TTTTTTCATCATCCTTAGCCATCAAGAAAATGCAAATCAAAGCTACTTTG
AGATTTCATTTTACACCCATCGGAATGGCTAAGATCAAAAGAACAACTGA
TGGGTCATGCTGGTGAGGATGTGAAATACGGGGAACACTCCTTCATCTGC
TGATGGGAGTGCAAACTTGTATAGCCACTATGAAAATCAGTGTGGTGACT
CCTCTGTAAAATGGGAATCAATCTACCTCAGGACCCAGCTATGCACATTC
TTAGGCATATACCATTTGTTCAACCATGTTCCACTGCTTTGTATACAAAT
AGCCCAAAATTTGAAACAACCTAAATGTCTCTTCCACCAAAAATGGTAAA
AGAAAAAATGGTACTTTTATACAATGGAAGCTTTCCTCTCCTGATTTAAG
CCATGGGCCCCTTTGCTAATTTGTGCGGGTATTATTTGGAAATCTACAAA
AAATCTTCCCTGAGGGAGGGAACCCCCAACCCCCAAAAAAAAAAATGGGT
GCCATATATGGCTTTTTTGAGGCCTTTTCTCCTTAATATAAAGGAAGACC
CAGCTCTCCCTTCTTNATCCACAAAAGGTTTTAATACTTCACTTAAGGTT
TTCTGCTGTAAATTATCTCATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_o05.b1 MSMg01no161_o05.b1 CHROMAT_FILE:
MSMg01no161_o05.b1 PHD_FILE: MSMg01no161_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:01 2005
         (414 letters)



>mm_chr13_95533283_95534096
          Length = 814

 Score =  675 bits (349), Expect = 0.0
 Identities = 395/411 (96%), Gaps = 2/411 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatgttttaattacagtggtaaaatactagctctaagtagactggatgttatta 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgttttatttacagtggtaaaatactagctctaagtagactggatgttatta 263

                                                                       
Query: 64  tactcttcagaataacaggacaagaagggaacttgagaacccaaattgtaataaataaat 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 tactcttcagaataacaggacaagaagggaaattgagaacccaaattgtaataaataaat 323

                                                                       
Query: 124 caaaatgataacaattattcaaatgctgcagtggaaatcaagaaatattagaagaagaaa 183
           ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 324 caaaaggataacaattattcaaatgctgcagtggaaatcaaggaatattaggagaagaaa 383

                                                                       
Query: 184 gagtactgaagtttagggaacaacctgatataccctttaatctcagtactcaacagacag 243
           |||||||||||||||||||||||||||| |   ||||||||| | | ||||| |||||||
Sbjct: 384 gagtactgaagtttagggaacaacctgagag--cctttaatccccgcactcagcagacag 441

                                                                       
Query: 244 aggcaggtaggtatatctctgagatttcaagggtagcctggtctacatagtaagaccgtg 303
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggcaggtaggtgtgtctctgagatttcaagggtagcctggtctacatagtaagaccgtg 501

                                                                       
Query: 304 tctttaaaaagtttcaaacaaaaacaatcaagcaaaaattaaggtgacaaataataaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctttaaaaagtttcaaacaaaaacaatcaagcaaaaattaaggtgacaaataataaagt 561

                                                              
Query: 364 atatggcctaaatctagccatatcaaaacttaggtcaaatgtaaatgttct 414
           | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agatggcctaaatctagccatatcaaaacttaggtcaaatgtaaatgttct 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)