BAC Information

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BAC

Clone NameMSMg01-162D20
Chromosome13 (Build37)
Map Location 97,351,260 - 97,351,385
singlet/doubletsinglet
Overlap geneCol4a3bp
Upstream geneF2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk
Downstream geneHmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162D20.T7 (MSMg01no162_d20.b1)MSMg01-162D20.TJ (MSMg01no162_d20.g1)
ACCAG361427AG361428
length720785
length of high quality
(start - end)
44 (145 - 188)126 (165 - 290)
definitionCHROMAT_FILE: MSMg01no162_d20.b1 PHD_FILE: MSMg01no162_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:33 2005CHROMAT_FILE: MSMg01no162_d20.g1 PHD_FILE: MSMg01no162_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACATCCAGCGGTATCTGATGCCCTTGGTCACCTGCACTCACAAG
CACATCAATACATACATACACACAAAGTTAAATAATGATAATGATAATAA
TAATAATAATAATTTCTTTTTTTATAGGTGAACAAAGGTAGATTACAAAT
GCAAGGCCAGGGATTGGGGATTTAGCTCAGTGAAAGAGCGCTTGCCTAGC
AAGCGCAAGGCCCTGTGTTCTGTCCTCATCTCTGGAAAAAACCCGCACAC
GAGAACGAAAGAAATGCAATGGCACGCCTAGCCTCATCAGAATTTTTGTG
AGAGGCAGGTTGTTTTTGATACCCCGCCCCCCCCAAGGGGAACTAAGAGG
AAAGGTGGAGGTTGTAACCCACAAGACATACAATAAGGCCCCCAACTGTG
ATGGGTTCTGGAGCGTTGACCTCGTGAAATGGGCAACCTTTTTGTGTTTA
CTAAGACAACCCATGTTATATATTTAACCTAAAATAACCAGCTGTCTACT
CGAGCAAGAAAACAAAAAAGCAATAAAGAATTAACCAAAAATTTCCGCAG
CCACGTAATCTAATGCAATGACTCTTATTTTTAATAATTCCACGCGTTTG
GTACCCCACCATAAAAAAGTAGTTGTCCAAACCTCTGCGAAGGAGACGAG
CGAAATCCGAAAAGAAAAGA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTATTTTTCAGACACATGAAAC
ATATAAAGTAAGGCTAGTGCTAGGAATACTTACATTACTCTACATTTCTT
AGCCCGTTAGTTTGGTTGATTATAGTCCTACCCATCTGATATGTTGAGGA
ATAAAAGGAGTAATTAAGGTTTACGTAAGTGCATTGATATTAGAGTATCT
TCAGATAAGTGCTACTCCCAGCTTACATAGAGATGAACCCTAATGGGTCA
TGTGACCATCGATCAGTCTTGTTGATGTTATCCAGGGGAGAGGAGGAAAA
GGAAAGGGGTTTTCTTTTTTTTGTTCCCCCCTCGCCCCCTACTTTCTAGT
TAATATGGGGGTTTTTTCACGGGCCACAAGAGTTTATAAATAATTACCCC
CTATCGGTGGGGATCGTCACCAGTCTTAATAAAAGAAGTTAACAAATCAA
GCCCTAGCNAATATTTCATTCTATGAAATGAATTATAAACGAGGATTACA
AGTAGGAATTTTCACAAAAAAAAACAAATTAAGAAAAAACGCCTATATAT
TAAAATACTTAAAACAACCTACAAGTAATCAATCCTTCCATATTAAACAC
CCTCTTCTTTCAAGGTAAATTATATCCCATATCAAGAACATTAATTTATT
GACCGAAGANATTTAGAATAATAGCTTACAATACAAGTAATTAACTTATT
TAGGCACCTAAATCAGGATCCTAGCTGGCTTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_d20.g1 MSMg01no162_d20.g1 CHROMAT_FILE:
MSMg01no162_d20.g1 PHD_FILE: MSMg01no162_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:33 2005
         (126 letters)



>mm_chr13_97351060_97351585
          Length = 526

 Score =  221 bits (114), Expect = 2e-62
 Identities = 123/126 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgattatagtcctacccatctgatatgttgaggaataaaaggagtaattaaggtttac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttggttatagtcctacccatctgatatgttgaggaataaaaggagtaattaaggtttac 260

                                                                       
Query: 61  gtaagtgcattgatattagagtatcttcagataagtgctactcccagcttacatagagat 120
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtaagtgcattgttattagagtatcttcagataggtgctactcccagcttacatagagat 320

                 
Query: 121 gaaccc 126
           ||||||
Sbjct: 321 gaaccc 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)