BAC Information

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BAC

Clone NameMSMg01-162N01
Chromosome13 (Build37)
Map Location 118,569,083 - 118,569,409
singlet/doubletsinglet
Overlap geneHcn1
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162N01.T7 (MSMg01no162_n01.b1)MSMg01-162N01.TJ (MSMg01no162_n01.g1)
ACCAG361823AG361824
length715710
length of high quality
(start - end)
330 (49 - 378)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no162_n01.b1 PHD_FILE: MSMg01no162_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:16 2005CHROMAT_FILE: MSMg01no162_n01.g1 PHD_FILE: MSMg01no162_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCATCAACCCTGTAATAATTTTTGGAACTAGAAAATAGTAT
CATTTGTATCAGACAGACATTCTGTAACTGCTGTACTCTATAATATATAT
ATAATTAGGGGTAAAGTGAAAACTATTCCACACAAGTTGCAGTGCCCTTG
AGGTGAGGTTTGAAAGTATCTCTTTTGGTATTTTGTTAGAATTGTCATCC
TACAAATATCAGATCACAGACTAAAGAAAAATACTGAAACTTCAGCCAAA
GAGTGAATACATAGCAGTAGGTATAGTGTAGTTATCATAAGGTTATTCCT
CGGTATCTTCTAATTTATAGTGTTATTTTCCCCCCGACGGCAACCTTCAT
ATTTTGTATGCCCTTCTTGTTGTACCTTGTGTGAAGGTTAATAGAGAGGT
TTTCAAGGATTGCTTTTACAAACTCTTGTAGCTCCTGAAGGCATTTCAGT
ATGTTCTATGAAAACCAGAAAATCCTTGTCTTTTAAAGCAATATTACCCC
GAATTCAATAAAAAACACAAGTGGTTTGAGTTATTCTGTAAATTTATAAG
CAATATCTGAACATTAACAGAAATTATGAGTTGTAACATCACAAAATAAT
ACATTATACATTTTTATTCAGTACTATTGTGTGTCTTTCAACAAAATACT
CACTGAGTTGCTTTN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCTTTTTCTTTTTCTTTTATTGTT
TCTTTTTGTTTTGTTTTTGTTTTTTGTTTGCTTTTTTTTTCGAGGCAGGG
TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT
GGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCGCGAGTGCTGGGATT
AAAGGCATGTGCCACCAGGCCCAGCTGAGGGAATTCTTTAACACAGAGTA
AGTTTTATTATATGCAAACTGAGAAGCAATTTATGAGGTCAGAGCCTTAT
TAGGAATGCTAATTATATTTGCCCCCCCTTGACACAAACTACAGCCATGT
GAAAGTCATTTGATTGAAAAAGAAATCCTCTATAAGATAGGGCTGTGGGG
AACCCTGTAGGGCTTTTTCTTAATTAGTGATTGTGTGGGGAAGATCCAGT
TCATTGTGGATAGTGTTATCCCTGGACTGGTGGTCTTAGGTTCTATAAGA
AGAGGCTGAACAAGCCATATAGAGCAAGCCAGTAAGCAACACCCTTTCAT
GGCCTCTGCATCAGCTCCTGCCTCCAAGTTTCTACACTGTTTTGAGTTCC
TGTGAAAGTGTAAGTCAAATAAATCCTTCCCTCCCCAACATGCTTTTTGA
TCATGGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_n01.b1 MSMg01no162_n01.b1 CHROMAT_FILE:
MSMg01no162_n01.b1 PHD_FILE: MSMg01no162_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:16 2005
         (330 letters)



>mm_chr13_118568879_118569609
          Length = 731

 Score =  609 bits (315), Expect = e-179
 Identities = 324/327 (99%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatcaaccctgtaataatttttggaactagaaaatagtatcatttgtatcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatcaaccctgtaataatttttggaactagaaaatagtatcatttgtatcag 264

                                                                       
Query: 65  acagacattctgtaactgctgtactctataatatatatataattaggggt-aaagtgaaa 123
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 265 acagacattctgtaactgctgtactctataatatatatatagttaggggtaaaagtgaaa 324

                                                                       
Query: 124 actattccacacaagttgcagtgcccttgaggtgaggtttgaaagtatctcttttggtat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actattccacacaagttgcagtgcccttgaggtgaggtttgaaagtatctcttttggtat 384

                                                                       
Query: 184 tttgttagaattgtcatcctacaaatatcagatcacagactaaagaaaaatactgaaact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgttagaattgtcatcctacaaatatcagatcacagactaaagaaaaatactgaaact 444

                                                                       
Query: 244 tcagccaaagagtgaatacatagcagtaggtatagtgtagttatcataaggttattcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcagccaaagagtgaatacatagcagtaggtatagtgtagttatcataaggttattcctc 504

                                      
Query: 304 ggtatcttctaatttatagtgttattt 330
           |||||||||||||||| ||||||||||
Sbjct: 505 ggtatcttctaatttacagtgttattt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 731
Length adjustment: 9
Effective length of query: 321
Effective length of database: 722
Effective search space:   231762
Effective search space used:   231762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)