ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACGAGTGTGAAGTATATTCATCTGTTTAGTGATGTGGGAGACAC
TCCCTTGCTAGATTATCACCTGAATACTAGAGGAGGTGTATGGTGCATCT
ATTGTCTTAATCTACATGGTAGCTTGTAACAACATTCTCTTAAGTATTTT
CTGGGAAGAATAACTGAATTGATATGATGCACACTTTTATTGTTTAAATA
TGAAAGCATGTATGTACTGAGACCACAGCTAGAACCTATATATTGTACTA
GTGATGACAACGTATGGTTGAACGTTGGGATACTTTGGAAAACGCATTGT
TCTTTGGTCTTATTGCCTTCTCCTCCTCGCATCAAGATGAAACCTATAAT
CATCTTTAGCACCTATTCTGACTCAACATCTATATAACCCATCTCCCCCT
ACTAATTCTGAAACAAATAAGTTAATTTGTTAATAATAATTTCAATTATT
TTTTCTGACACTTTCCATTCCAGATGTCATGTAACTATACTCCACAAACT
CCAGTATTTACTTACAAATTACCGCACATTGCCAGATAAATAGCGAGGTG
CTTCTATGCTGATTTTCTTTGAATAGAAATAGGCTTTGTTGAGGTAGCAG
GCGTTTGTAGATAAAATATTTTTTGGAAAATCTTTAGTTGAACTGACTAG
TGTTTTTATTTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAATCCCTGTGACTTTATTGTT
ATCGAAGGGATTAAAAGGGACTTCGGAAGTTGGTAGAGATGGCAGAGGTA
TCTATCAGAAGAAACTTTTCATGCTGTTTTTAAAGTTAACTCTTTCCAGG
GAGAATGAAGCTGCTGAAATATCTTCCAAGCTTTTCAGTCATCATTCTAC
ACAGCCAAGGTAGACATTTTGGCAGAAATGCAGCTGGGACTTTACTGATT
ATAGGCATGTACTTCAGTGTGAATTCTTGCCAAATACAAATACAACAATG
GGTCCTAATGATATTTTTATCCCCCCCCCTGAGCACCATACATTTAAAGA
GGACGCCCCCATTGCCTCTTCCCCTTAGAGGAGAGGAAGAACTATGGTTA
GACTATGAGATAAGAGCACATATGCCCAATCGATTTAGTATTCTTGATCC
TCCATAACAGGAGATCCATACAATGGAGTTAAAAGGTCACCTCAGCTTTT
CATTCAGTCTGCTAGTGAGATCAGTATGTTAGTAGTCATTATATAAACAC
GTAAGCACACCTCCTCAGATGCATCTTGTGTTTTATAGACAAGTGAATCA
CATGCTACCAAGTACGGCAAATTCTTATTCTGAGCAGTACTGCACAGGGC
TCCCGCCCCAATCTTN

Query= MSMg01no163_a14.b1 MSMg01no163_a14.b1 CHROMAT_FILE:
MSMg01no163_a14.b1 PHD_FILE: MSMg01no163_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:32 2005
         (316 letters)



>mm_chr13_109879927_109880642
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacgagtgtgaagtatattcatctgtttagtgatgtgggagacactcccttgcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcacgagtgtgaagtatattcatctgtttagtgatgtgggagacactcccttgcta 457

                                                                       
Query: 65  gattatcacctgaatactagaggaggtgtatggtgcatctattgtcttaatctacatggt 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 456 gattatcacctgaatactagaggaggtgtattgtgcatctattgtcttaatctacatggt 397

                                                                       
Query: 125 agcttgtaacaacattctcttaagtattttctgggaagaataactgaattgatatgatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcttgtaacaacattctcttaagtattttctgggaagaataactgaattgatatgatgc 337

                                                                       
Query: 185 acacttttattgtttaaatatgaaagcatgtatgtactgagaccacagctagaacctata 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcacttttattgtttaaatatgaaagcatgtatgtactgagaccacagctagaacctata 277

                                                                       
Query: 245 tattgtactagtgatgacaacgtatggttgaacgttgggatactttggaaaacgcattgt 304
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 gattgtactagtgatgacaacgtatggttgaacgttgggatacttcggaaaacgcattgt 217

                       
Query: 305 tctttggtctta 316
           ||||||||||||
Sbjct: 216 tctttggtctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no163_a14.g1 MSMg01no163_a14.g1 CHROMAT_FILE:
MSMg01no163_a14.g1 PHD_FILE: MSMg01no163_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:32 2005
         (287 letters)



>mm_chr13_109788200_109788886
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatccctgtgactttattgttatcgaagggattaaaagggacttcggaagttggtag 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aataatccctgtgactttattgttatcaaagggattaaaagggacttcggaagttggtag 260

                                                                       
Query: 61  agatggcagaggtatctatcagaagaaacttttcatgctgtttttaaagttaactctttc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 agatggcagaggtatctatcagaagaaacttttcatgctgtttttaaagttaaccctttc 320

                                                                       
Query: 121 cagggagaatgaagctgctgaaatatcttccaagcttttcagtcatcattctacacagcc 180
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggagaatgaagccactgaaatatcttccaagcttttcagtcatcattctacacagcc 380

                                                                       
Query: 181 aaggtagacattttggcagaaatgcagctgggactttactgattataggcatgtacttca 240
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 381 aaggtagacattttggcagaaatgcagctgggactttactgattgtaggcgtgtacttca 440

                                                          
Query: 241 gtgtgaattcttgccaaatacaaatacaacaatgggtcctaatgata 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgaattcttgccaaatacaaatacaacaatgggtcctaatgata 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)